Curated entries outside their reference proteomes
Generated: 2026-10-18T22:54:14.286362+00:00. Scope: genes/POPTR.
Select live Swiss-Prot accessions in our local gene-review set whose exact NCBI taxon has a UniProt reference proteome, but whose accession belongs to none of those reference proteomes. All local review statuses, including drafts, are included; duplicate accessions are counted once.
Summary
- Local review files: 141; unique identifiers: 141.
- Live Swiss-Prot: 141; unreviewed: 0; unresolved accessions: 0.
- RNAcentral/non-protein identifiers: 0 (excluded from Swiss-Prot audit).
- Swiss-Prot already in an exact-taxon reference proteome: 135.
- Swiss-Prot with no exact-taxon reference proteome: 0 (excluded; this can be expected for non-reference species/strains).
- Candidates: 6 accessions across 1 taxa.
- Local GOA available for 6/6 candidates; 0 have partial cache coverage.
- Cached GOA rows: 34, including 1 non-IEA, 0 experimental, and 0 NOT rows.
GO evidence on candidate accessions
These are original cached GOA annotation rows, regardless of our review decisions. Reviewer-proposed NEW annotations are excluded. Exact duplicate rows across caches are counted once per accession. Non-IEA is not synonymous with experimental; IBA remains separately visible as phylogenetic curation. Missing caches are unknown, not zero.
| Evidence code | Annotation rows |
|---|---|
| IEA | 33 |
| ISS | 1 |
Candidate entries
| Accession | Local gene | Organism | Protein | Reference proteome(s) | Other proteome membership | GOA rows | Non-IEA | Experimental | Evidence counts | Links |
|---|---|---|---|---|---|---|---|---|---|---|
| A9PCL4 | POPTR/PRX2 | Populus trichocarpa | Peroxiredoxin-2 | UP000006729 | None | 5 | 0 | 0 | IEA: 5 | GOA |
| O65862 | POPTR/CCOAOMT1 | Populus trichocarpa | Caffeoyl-CoA O-methyltransferase 1 | UP000006729 | None | 3 | 0 | 0 | IEA: 3 | GOA |
| O65922 | POPTR/CCOAOMT2 | Populus trichocarpa | Caffeoyl-CoA O-methyltransferase 2 | UP000006729 | None | 3 | 0 | 0 | IEA: 3 | GOA |
| P16579 | POPTR/WIN6 | Populus trichocarpa | Acidic endochitinase WIN6 | UP000006729 | None | 7 | 0 | 0 | IEA: 7 | GOA |
| P34105 | POPTR/MAOX | Populus trichocarpa | NADP-dependent malic enzyme | UP000006729 | None | 7 | 0 | 0 | IEA: 7 | GOA |
| P45730 | POPTR/PAL | Populus trichocarpa | Phenylalanine ammonia-lyase | UP000006729 | None | 9 | 1 | 0 | IEA: 8; ISS: 1 | GOA |
Interpretation and requested follow-up
Please check whether these curated accessions should be linked to the reference proteome, or whether another accession represents the same locus/sequence. If a TrEMBL counterpart exists, assess sequence equivalence and preservation of experimentally supported and other non-IEA GO annotations before changing the accession used in our reviews.
Absence of an accession does not establish absence of its gene, sequence, or GO annotations from the reference proteome, and does not imply planned deletion from Swiss-Prot. This report has not mapped alternative accessions or measured unique annotation loss. Different strains and descendant taxa are not treated as the same taxon.
Provenance
UniProt release(s): 2026_03. API retrieval range: 2026-10-18T21:56:15.004855+00:00 to 2026-10-18T21:56:16.074111+00:00.
Membership uses the UniProtKB Proteomes cross-references and the Proteomes API's reference classification. API query caches expire after seven days; --refresh fetches anew and --offline reuses dated caches. Network/pagination failures abort instead of inferring absence. The CSV records GOA source paths and SHA-256 hashes; annotation dates below are GOA DATE values, not download timestamps.
| Accession | Local GOA source | GOA annotation date range | Cache status |
|---|---|---|---|
| A9PCL4 | genes/POPTR/PRX2/PRX2-goa.tsv | 20260601–20260601 | available |
| O65862 | genes/POPTR/CCOAOMT1/CCOAOMT1-goa.tsv | 20260227–20260428 | available |
| O65922 | genes/POPTR/CCOAOMT2/CCOAOMT2-goa.tsv | 20260227–20260428 | available |
| P16579 | genes/POPTR/WIN6/WIN6-goa.tsv | 20260601–20260601 | available |
| P34105 | genes/POPTR/MAOX/MAOX-goa.tsv | 20260428–20260428 | available |
| P45730 | genes/POPTR/PAL/PAL-goa.tsv | 20211209–20260428 | available |