Review-quality audit: templated-boilerplate scan
Auto-generated by projects/REVIEW_QUALITY_AUDIT/scan_boilerplate.py.
- Review files scanned: 2801
- Flagged: 34 — Tier 1: 0, Tier 2: 0, Tier 3: 34
Tier 1 (critical) — fake/non-specific supporting evidence
Generic placeholder supporting_text on many annotations: the evidence does not support the specific term. Same defect class as the mouse Fyn review. Re-review fully.
| File | reviewed | placeholder uses | top templated reason |
|---|---|---|---|
| none |
Tier 2 — summary AND reason both templated
Both the summary and the reason are drawn from a tiny templated set (unique-summary ratio ≤ 0.15 and unique-reason ratio ≤ 0.15). The per-annotation rationale carries no real curation signal even though the supporting_text may be a real quote. Genuine rework needed.
| File | reviewed | uniq-summary ratio | uniq-reason ratio | top reason |
|---|---|---|---|---|
| none |
Tier 3 — reason-only boilerplate (low severity)
Only the one-line reason is templated; the summary is term-specific (unique-summary ratio > 0.15) and supporting_text is a real quote. The substantive review is genuine — only the reason field is lazy. Low priority; can be tightened in bulk later.
| File | reviewed | uniq-summary ratio | uniq-reason ratio | top reason |
|---|---|---|---|---|
| human/AKT1/AKT1-ai-review.yaml | 446 | 0.325 | 0.036 | 208× "Falcon research and UniProt support AKT1 activation downstream of PI3K and phosphorylation" |
| mouse/Bcl2/Bcl2-ai-review.yaml | 359 | 0.474 | 0.05 | 177× "Bcl2-dependent survival has broad tissue and developmental consequences; these terms are b" |
| human/AGO2/AGO2-ai-review.yaml | 267 | 0.199 | 0.049 | 134× "The falcon report supports AGO2 function in miRISC-mediated small-RNA-guided repression an" |
| mouse/Edn1/Edn1-ai-review.yaml | 253 | 0.684 | 0.055 | 114× "This overstates the direct role of the gene product; the curated model is better captured " |
| mouse/Mapk1/Mapk1-ai-review.yaml | 233 | 0.481 | 0.043 | 111× "The generic ERK context-dependence evidence does not justify retaining this specific annot" |
| mouse/Pten/Pten-ai-review.yaml | 231 | 0.662 | 0.035 | 169× "Secondary or downstream function" |
| mouse/Cdc42/Cdc42-ai-review.yaml | 226 | 0.509 | 0.071 | 98× "The term directly reflects Cdc42 GDP/GTP switch activity, effector binding, membrane local" |
| mouse/Syk/Syk-ai-review.yaml | 223 | 0.498 | 0.063 | 106× "The annotation is biologically plausible for Syk-dependent immune, platelet, myeloid, vasc" |
| rat/Hspa8/Hspa8-ai-review.yaml | 208 | 0.635 | 0.087 | 133× "Kept as non-core to preserve potentially valid context-specific annotation without elevati" |
| mouse/Hsp90aa1/Hsp90aa1-ai-review.yaml | 201 | 0.488 | 0.06 | 118× "Retain this annotation as context-specific while keeping the core review focused on ATP-de" |
| human/PSMA1/PSMA1-ai-review.yaml | 191 | 0.22 | 0.063 | 86× "The reviewed core function occurs in cytosolic and nuclear proteasome pools, supported by " |
| mouse/Mapk3/Mapk3-ai-review.yaml | 186 | 0.565 | 0.054 | 112× "The generic ERK context-dependence evidence does not justify retaining this specific annot" |
| mouse/Myc/Myc-ai-review.yaml | 181 | 0.619 | 0.061 | 73× "The term directly reflects Myc DNA binding, transcription factor activity, Myc-Max complex" |
| mouse/Ednra/Ednra-ai-review.yaml | 172 | 0.715 | 0.064 | 101× "This annotation captures a real downstream or context-specific consequence of Ednra activi" |
| mouse/Calm1/Calm1-ai-review.yaml | 155 | 0.465 | 0.026 | 94× "Tissue-specific or specialized function" |
| human/PSMB5/PSMB5-ai-review.yaml | 154 | 0.201 | 0.071 | 75× "The reviewed core function occurs in cytosolic and nuclear proteasome pools, supported by " |
| mouse/Calm2/Calm2-ai-review.yaml | 134 | 0.687 | 0.097 | 57× "Tissue-specific or specialized function" |
| mouse/Dnmt1/Dnmt1-ai-review.yaml | 127 | 0.346 | 0.087 | 74× "Secondary or downstream function" |
| mouse/Calm3/Calm3-ai-review.yaml | 125 | 0.992 | 0.128 | 53× "Tissue-specific or specialized function" |
| mouse/Hras/Hras-ai-review.yaml | 119 | 0.487 | 0.084 | 62× "This term reflects a cell-type, disease-model, developmental, transcriptional, or phenotyp" |
| human/AGO1/AGO1-ai-review.yaml | 113 | 0.265 | 0.088 | 63× "The falcon report supports AGO1 function in miRISC-mediated small-RNA-guided repression an" |
| human/AGO3/AGO3-ai-review.yaml | 95 | 0.316 | 0.116 | 60× "The falcon report supports AGO3 function in miRISC-mediated small-RNA-guided repression an" |
| human/AGO4/AGO4-ai-review.yaml | 83 | 0.277 | 0.108 | 59× "The falcon report supports AGO4 function in miRISC-mediated small-RNA-guided repression an" |
| human/ABCA7/ABCA7-ai-review.yaml | 81 | 0.16 | 0.086 | 55× "The term aligns with direct biochemical evidence or well-supported cellular consequences o" |
| human/APH1A/APH1A-ai-review.yaml | 73 | 0.178 | 0.096 | 38× "The term aligns with APH1A function as a non-catalytic gamma-secretase subunit that suppor" |
| human/PSENEN/PSENEN-ai-review.yaml | 71 | 0.155 | 0.099 | 29× "The term aligns with PSENEN/PEN-2 function as an essential non-catalytic gamma-secretase s" |
| yeast/NAP1/NAP1-ai-review.yaml | 60 | 0.533 | 0.117 | 24× "Marked over-annotated because more specific terms capture the biology more accurately." |
| human/CD33/CD33-ai-review.yaml | 45 | 0.311 | 0.133 | 18× "This term captures the core CD33/Siglec-3 role as a myeloid cell-surface sialic-acid-bindi" |
| rat/Slc13a2/Slc13a2-ai-review.yaml | 44 | 1.0 | 0.091 | 32× "This term is directly supported by Slc13a2 sodium-coupled dicarboxylate transport of succi" |
| human/APH1B/APH1B-ai-review.yaml | 43 | 0.256 | 0.116 | 22× "The term aligns with APH1B function as a non-catalytic gamma-secretase subunit that suppor" |
| DANRE/cyp26a1/cyp26a1-ai-review.yaml | 38 | 0.711 | 0.079 | 25× "This annotation is broad, inferred, or reflects downstream developmental/physiological con" |
| yeast/PDI1/PDI1-ai-review.yaml | 32 | 0.531 | 0.062 | 23× "Retained as supported or plausible for this gene and evidence context." |
| DANRE/gnptab/gnptab-ai-review.yaml | 26 | 1.0 | 0.077 | 14× "This annotation is broad, inferred, or reflects downstream developmental/physiological con" |
| yeast/EUG1/EUG1-ai-review.yaml | 24 | 0.417 | 0.083 | 20× "Retained as supported or plausible for this gene and evidence context." |