EMC3

UniProt ID: Q9P0I2
Organism: Homo sapiens
Review Status: COMPLETE
πŸ“ Provide Detailed Feedback

Gene Description

EMC3 (ER membrane protein complex subunit 3; also TMEM111) is a 261-residue polytopic ER membrane protein with three transmembrane helices and a lumenal N-terminus, and is the catalytic insertase subunit of the ER membrane protein complex (EMC), a conserved nine- to ten-subunit transmembrane-domain insertase and membrane-protein chaperone of the endoplasmic reticulum. EMC3 belongs to the Oxa1/YidC/Get1 insertase superfamily and is a distant homolog of the tail-anchored-protein insertase Get1; together with the small subunit EMC6 it forms the membrane-embedded hydrophilic vestibule through which substrate transmembrane domains are inserted. A methionine-rich cytosolic loop of EMC3 is required for substrate engagement, and structure-guided mutations of EMC3 residues lining the vestibule (e.g. Arg-31, the Met-rich loop, Arg-180) reduce client insertion without disrupting complex assembly, demonstrating that EMC3 provides the substrate-conducting active site. As part of the EMC, EMC3 enables the energy-independent insertion of newly synthesized membrane proteins into the ER membrane, with a preference for transmembrane domains that are weakly hydrophobic or carry destabilizing charged or aromatic residues. It mediates post-translational insertion of tail-anchored proteins and cotranslational insertion and N-exo topogenesis of multipass membrane proteins, including the first transmembrane domain of G protein-coupled receptors, in cooperation with the Sec61 translocon. EMC3 is broadly expressed and resides in the ER membrane.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0032977 membrane insertase activity
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic (PAN-GO) assignment of membrane insertase activity across the EMC3/Oxa1-YidC family. EMC3 forms the substrate-conducting catalytic vestibule of the EMC with EMC6, so membrane insertase activity is the core molecular function; the contributes_to qualifier reflects that EMC3 acts within the multi-subunit complex.
Reason: Core molecular function; EMC3 is the catalytic insertase subunit (YidC/Oxa1/Get1 superfamily) and provides the membrane vestibule, with mutagenesis separating its insertion role from complex assembly.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
No effect on EMC assembly but decreased
GO:0071816 tail-anchored membrane protein insertion into ER membrane
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic propagation of the EMC's tail-anchored protein insertion role across the EMC3 family, consistent with direct experimental and structural evidence. Core EMC process executed at the EMC3/EMC6 vestibule.
Reason: Core EMC-mediated process; the EMC post-translationally inserts tail-anchored proteins through the EMC3-containing vestibule.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
post-translational insertion of tail-anchored/TA proteins in
GO:0072546 EMC complex
IBA
GO_REF:0000033
ACCEPT
Summary: Phylogenetic assignment of EMC complex membership across the EMC3 family, matching direct experimental and structural evidence. Core structural identity of EMC3.
Reason: EMC complex membership is a core cellular-component identity of EMC3 and is supported by IDA, cryo-EM structures, and the conserved EMC3 family.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Component of the ER membrane protein complex (EMC).
GO:0005789 endoplasmic reticulum membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Electronic transfer of the ER membrane subcellular location from UniProt; the correct and core compartment for the multipass ER membrane subunit EMC3.
Reason: Correct core location; redundant with experimental EXP/IDA evidence.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0016020 membrane
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: InterPro-based generic membrane assignment, a parent of the specific ER membrane localization.
Reason: Correct but generic; the specific ER membrane term captures the informative localization.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Multi-pass membrane protein
GO:0005515 protein binding
IPI
PMID:26496610
A human interactome in three quantitative dimensions organiz...
KEEP AS NON CORE
Summary: Quantitative interactome capture of EMC3 with the EMC cytosolic scaffold EMC2 (Q15006). A bona fide intra-complex partnership, but bare protein binding is uninformative.
Reason: Genuine EMC subunit interaction (EMC2); bare protein binding is uninformative and not core.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Q9P0I2; Q15006: EMC2
GO:0005515 protein binding
IPI
PMID:32296183
A reference map of the human binary protein interactome.
KEEP AS NON CORE
Summary: High-throughput binary (HuRI) interactome capture of EMC3 with a non-EMC partner (Q13126). Bare protein binding is uninformative and the partner is most plausibly an incidental high-throughput hit or a membrane-protein client.
Reason: High-throughput binary interaction; bare protein binding is uninformative and not core.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Component of the ER membrane protein complex (EMC).
GO:0005515 protein binding
IPI
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling...
KEEP AS NON CORE
Summary: BioPlex affinity-MS interactome capture of EMC3 with the EMC scaffold EMC2 (Q15006). Genuine EMC partner but bare protein binding is uninformative.
Reason: Genuine EMC subunit interaction (EMC2); bare protein binding is uninformative and not core.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Q9P0I2; Q15006: EMC2
GO:0005515 protein binding
IPI
PMID:35271311
OpenCell: Endogenous tagging for the cartography of human ce...
KEEP AS NON CORE
Summary: OpenCell endogenous-tagging interactome capture of EMC3 with the EMC scaffold EMC2 (Q15006). Genuine EMC partner but bare protein binding is uninformative.
Reason: Genuine EMC subunit interaction (EMC2); bare protein binding is uninformative and not core.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Q9P0I2; Q15006: EMC2
GO:0005515 protein binding
IPI
PMID:40205054
Multimodal cell maps as a foundation for structural and func...
KEEP AS NON CORE
Summary: Multimodal cell-map interactome capture of EMC3 with the EMC scaffold EMC2 (Q15006). Genuine EMC partner but bare protein binding is uninformative.
Reason: Genuine EMC subunit interaction (EMC2); bare protein binding is uninformative and not core.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Q9P0I2; Q15006: EMC2
GO:0005789 endoplasmic reticulum membrane
EXP
PMID:22119785
Defining human ERAD networks through an integrative mapping ...
ACCEPT
Summary: Experimental ER membrane localization from the foundational ERAD-network mapping study that first identified the EMC. Core compartment.
Reason: Experimentally supported core location.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0005789 endoplasmic reticulum membrane
NAS
PMID:29242231
The ER membrane protein complex is a transmembrane domain in...
ACCEPT
Summary: ComplexPortal NAS annotation of ER membrane localization for the EMC, consistent with the experimental evidence and core compartment of EMC3.
Reason: Correct core location; consistent with EXP/IDA evidence.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence
IDA
PMID:29242231
The ER membrane protein complex is a transmembrane domain in...
ACCEPT
Summary: The EMC inserts transmembrane domains, including stop-transfer membrane-anchor sequences of multipass clients; EMC3 forms the insertase vestibule. Core EMC process.
Reason: Core EMC-mediated process; EMC3 provides the substrate-conducting active site of the insertase.
Supporting Evidence:
PMID:29242231
transmembrane domain insertase
GO:0071816 tail-anchored membrane protein insertion into ER membrane
IDA
PMID:29242231
The ER membrane protein complex is a transmembrane domain in...
ACCEPT
Summary: The EMC mediates post-translational insertion of tail-anchored proteins with moderately hydrophobic TMDs, demonstrated directly in this study; insertion occurs at the EMC3/EMC6 vestibule. Core EMC process.
Reason: Core EMC-mediated process; directly demonstrated, executed at the EMC3-containing vestibule.
Supporting Evidence:
PMID:29242231
tail-anchored membrane proteins with moderately hydrophobic transmembrane
GO:0072546 EMC complex
IPI
PMID:32439656
Structural basis for membrane insertion by the human ER memb...
ACCEPT
Summary: ComplexPortal IPI assignment of EMC complex membership based on the cryo-EM structure of the human EMC, which places EMC3 at the catalytic insertion vestibule. Core structural identity.
Reason: Structurally demonstrated core EMC membership.
Supporting Evidence:
PMID:32439656
formed by the subunits EMC3 and EMC6
GO:0032977 membrane insertase activity
IMP
PMID:29809151
The ER membrane protein complex interacts cotranslationally ...
ACCEPT
Summary: IMP evidence (cotranslational multipass biogenesis study) that the EMC has membrane insertase activity; EMC3 provides the catalytic vestibule. Core MF.
Reason: Core MF; EMC3 is the catalytic insertase subunit, with activity separable from assembly by mutagenesis.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
No effect on EMC assembly but decreased
GO:0032977 membrane insertase activity
IMP
PMID:30415835
EMC Is Required to Initiate Accurate Membrane Protein Topoge...
ACCEPT
Summary: IMP evidence (topogenesis study) supporting the EMC's membrane insertase activity; EMC3 forms the substrate-conducting vestibule. Core MF.
Reason: Core MF; EMC3 provides the catalytic insertase active site.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
No effect on EMC assembly but decreased
GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence
IMP
PMID:29809151
The ER membrane protein complex interacts cotranslationally ...
ACCEPT
Summary: The EMC is required for cotranslational insertion of multipass proteins in which stop-transfer membrane-anchor sequences become membrane-spanning helices; EMC3 is the catalytic subunit. Core EMC process.
Reason: Core EMC-mediated process; supported by IMP of EMC subunits.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
stop-transfer membrane-anchor sequences become ER membrane spanning
GO:0005789 endoplasmic reticulum membrane
IDA
PMID:32439656
Structural basis for membrane insertion by the human ER memb...
ACCEPT
Summary: Direct (cryo-EM structural) evidence placing EMC3 in the ER membrane as a multipass subunit at the insertase vestibule. Core compartment.
Reason: Experimentally supported core location.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0045050 protein insertion into ER membrane by stop-transfer membrane-anchor sequence
IMP
PMID:30415835
EMC Is Required to Initiate Accurate Membrane Protein Topoge...
ACCEPT
Summary: IMP evidence (topogenesis study) that the EMC inserts stop-transfer membrane-anchor sequences and sets the N-exo topology of multipass clients such as GPCRs; EMC3 is the catalytic subunit. Core EMC process.
Reason: Core EMC-mediated process.
Supporting Evidence:
PMID:30415835
G protein-coupled receptors
GO:0016020 membrane
IDA
PMID:22119785
Defining human ERAD networks through an integrative mapping ...
KEEP AS NON CORE
Summary: Direct generic membrane localization from the EMC-discovery study; a parent of the specific ER membrane term.
Reason: Correct but generic; the ER membrane term captures the informative localization.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
GO:0072546 EMC complex
IDA
PMID:22119785
Defining human ERAD networks through an integrative mapping ...
ACCEPT
Summary: Direct experimental identification of EMC3 in the EMC by the foundational ERAD-network mapping study. Core structural identity.
Reason: Core EMC membership; directly demonstrated.
Supporting Evidence:
file:human/EMC3/EMC3-uniprot.txt
Component of the ER membrane protein complex (EMC).

Core Functions

Catalytic insertase subunit of the EMC (Oxa1/YidC/Get1 superfamily); together with EMC6 forms the membrane-embedded hydrophilic vestibule that provides the substrate-conducting active site for energy-independent insertion of transmembrane domains into the ER membrane.

Molecular Function:
membrane insertase activity
In Complex:
EMC complex
Supporting Evidence:
  • file:human/EMC3/EMC3-uniprot.txt
    No effect on EMC assembly but decreased
  • PMID:32439656
    formed by the subunits EMC3 and EMC6
  • PMID:37199759
    Positively charged residues at the entrance to the vestibule function as a selectivity filter

As the catalytic core of the EMC, mediates post-translational insertion of tail-anchored proteins and cotranslational insertion and N-exo topogenesis of multipass membrane proteins (including GPCRs) at the ER membrane.

Supporting Evidence:
  • file:human/EMC3/EMC3-uniprot.txt
    post-translational insertion of tail-anchored/TA proteins in
  • PMID:37957425
    TMDs near the carboxyl terminus of mammalian multipass proteins are inserted post-translationally by the endoplasmic reticulum membrane protein complex (EMC)

References

Loading supporting content…

Download this section (compressed HTML)

Suggested Questions for Experts

Q: What is the precise reaction trajectory of a substrate transmembrane domain through the EMC3/EMC6 hydrophilic vestibule, and how do the Met-rich cytosolic loop and the vestibule arginines (R31, R180) lower the energetic barrier to insertion?

Q: How does EMC3 discriminate moderately hydrophobic or charge-bearing client TMDs from highly hydrophobic TMDs that are instead handled by the Sec61 translocon?

Suggested Experiments

Experiment: Reconstitute insertion of model tail-anchored and multipass substrates into proteoliposomes containing wild-type versus vestibule-mutant EMC3 (R31A, Met-loop mutants, R180A) to quantify the residue-specific contribution of EMC3 to insertion efficiency independent of complex assembly.

Experiment: Use site-specific crosslinking or time-resolved cryo-EM to capture substrate TMDs engaged at the EMC3/EMC6 vestibule during insertion and define the path of the translocating segment.

Deep Research

Falcon

(EMC3-deep-research-falcon.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“š Additional Documentation

Notes

(EMC3-notes.md)

Loading supporting content…

Download this section (compressed HTML)

Pn Notes

(EMC3-pn-notes.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“„ View Raw YAML

Loading supporting content…

Download this section (compressed HTML)