EIF4E2 (eIF4E homologous protein, 4EHP) is a class II member of the eIF4E cap-binding protein family. It recognizes and binds the 7-methylguanosine (m7G) mRNA 5' cap but, unlike the canonical eIF4E, cannot bind the scaffold eIF4G; it therefore competes with eIF4E for the cap and blocks assembly of the eIF4F initiation complex, acting as a repressor of cap-dependent translation initiation rather than a promoter of it. 4EHP is the catalytic-cap-binding core of the 4EHP-GIGYF2 translational-repressor module: bound to GIGYF2 (and ZNF598/DDX6) it sequesters the cap of specific mRNAs to suppress their translation, including as part of ribosome-associated quality control, where it lowers the translational load on messages that cause ribosome stalling. 4EHP is also an integral component of miRNA-mediated silencing, contributing cap-binding activity that, via 4E-T and the CCR4-NOT complex, represses translation of miRNA targets, and it mediates miR-34a- directed negative-feedback control of IFNB1 (type I interferon) production - a circuit co-opted by SARS-CoV-2 nsp2. It localizes to the cytoplasm and to P-bodies and is itself a substrate for ubiquitylation by the RBR E3 ligase ARIH1/HHARI.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0000340
RNA 7-methylguanosine cap binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: 4EHP binds the m7G mRNA cap - its defining, structurally confirmed molecular function and the basis of its repressor activity. Core.
Reason: Cap binding is established by structural and biochemical studies and underlies the competitive repression of cap-dependent initiation.
Supporting Evidence:
PMID:17368478
Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
|
|
GO:0003743
translation initiation factor activity
|
IBA
GO_REF:0000033 |
MODIFY |
Summary: Phylogenetic transfer from the eIF4E family. 4EHP is NOT a canonical initiation factor - it cannot bind eIF4G and represses rather than promotes initiation. This MF is misleading for 4EHP.
Reason: Unlike eIF4E, 4EHP cannot recruit eIF4G and does not promote initiation; it competes for the cap to block eIF4F assembly. A translation-repressor MF is appropriate, not 'translation initiation factor activity'.
Proposed replacements:
translation regulator activity
Supporting Evidence:
file:human/EIF4E2/EIF4E2-uniprot.txt
it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
|
|
GO:0006413
translational initiation
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: Phylogenetic transfer. 4EHP participates in initiation only as a repressor; the generic 'translational initiation' over-states a positive role.
Reason: 4EHP represses, rather than mediates, cap-dependent initiation; the specific role is better captured by negative regulation of translational initiation.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-uniprot.txt
it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
|
|
GO:0016281
eukaryotic translation initiation factor 4F complex
|
IBA
GO_REF:0000033 |
REMOVE |
Summary: Phylogenetic transfer from eIF4E. 4EHP is NOT a component of the productive eIF4F complex - it specifically lacks eIF4G binding and functions in distinct repressor complexes (4EHP-GIGYF2). This CC assignment is incorrect for 4EHP.
Reason: 4EHP cannot bind eIF4G and does not assemble into eIF4F; the annotation is an erroneous family-level transfer.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-uniprot.txt
it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
|
|
GO:0000932
P-body
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: P-body localization. Consistent with 4EHP's role in miRNA-mediated repression and mRNA storage/decay; corroborated by IDA.
Reason: 4EHP localizes to P-bodies and acts there in miRNA silencing.
Supporting Evidence:
PMID:28487484
Cap-binding protein 4EHP effects translation silencing by microRNAs.
|
|
GO:0003723
RNA binding
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: Generic RNA binding (IEA). 4EHP binds the m7G cap of mRNAs; the more specific cap- binding MF is the informative term.
Reason: Correct but subsumed by the specific RNA 7-methylguanosine cap binding annotation.
Supporting Evidence:
PMID:17368478
Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
|
|
GO:0003743
translation initiation factor activity
|
IEA
GO_REF:0000002 |
MODIFY |
Summary: Electronic transfer. As with the IBA, 4EHP is a cap-binding repressor, not a productive initiation factor.
Reason: 4EHP does not promote initiation; a translation-regulator/repressor MF is correct.
Proposed replacements:
translation regulator activity
Supporting Evidence:
file:human/EIF4E2/EIF4E2-uniprot.txt
it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Cytoplasmic localization (IEA). Consistent with 4EHP's cytosolic translation- repression activity.
Reason: 4EHP is a cytoplasmic cap-binding protein; supported by direct evidence.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:0006413
translational initiation
|
IEA
GO_REF:0000002 |
MARK AS OVER ANNOTATED |
Summary: Electronic transfer over-stating a positive initiation role.
Reason: 4EHP represses cap-dependent initiation; the positive 'translational initiation' involvement is misleading.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-uniprot.txt
it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
|
|
GO:0005515
protein binding
|
IPI
PMID:15094042 Characterizing the interaction of the mammalian eIF4E-relate... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:15094042
|
|
GO:0005515
protein binding
|
IPI
PMID:15161933 Comprehensive proteomic analysis of interphase and mitotic 1... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation from an mRNA-degradation interaction framework. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:15161933
|
|
GO:0005515
protein binding
|
IPI
PMID:16189514 Towards a proteome-scale map of the human protein-protein in... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:16189514
|
|
GO:0005515
protein binding
|
IPI
PMID:19060904 An empirical framework for binary interactome mapping. |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:19060904
|
|
GO:0005515
protein binding
|
IPI
PMID:22678294 An oxygen-regulated switch in the protein synthesis machiner... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:22678294
|
|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
KEEP AS NON CORE |
Summary: Generic protein-binding annotation from the HI-III human interactome (Y2H). Uninformative as a molecular function.
Reason: Large-scale interactome screen; no specific functional insight.
Supporting Evidence:
PMID:25416956
A proteome-scale map of the human interactome network.
|
|
GO:0005515
protein binding
|
IPI
PMID:25959826 Quantitative interaction proteomics of neurodegenerative dis... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:25959826
|
|
GO:0005515
protein binding
|
IPI
PMID:28514442 Architecture of the human interactome defines protein commun... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:28514442
|
|
GO:0005515
protein binding
|
IPI
PMID:31515488 Extensive disruption of protein interactions by genetic vari... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:31515488
|
|
GO:0005515
protein binding
|
IPI
PMID:32814053 Interactome Mapping Provides a Network of Neurodegenerative ... |
KEEP AS NON CORE |
Summary: Generic protein-binding annotation from a neurodegenerative-disease interactome mapping study. Uninformative as a molecular function.
Reason: High-throughput interactome dataset; no specific functional insight.
Supporting Evidence:
PMID:32814053
Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
|
|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
KEEP AS NON CORE |
Summary: Generic protein-binding annotation from the BioPlex interactome. Uninformative as a molecular function.
Reason: High-throughput AP-MS interactome; the meaningful GIGYF1/GIGYF2 interactions are captured separately.
Supporting Evidence:
PMID:33961781
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
|
|
GO:0005515
protein binding
|
IPI
PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... |
KEEP AS NON CORE |
Summary: Generic protein-binding annotation from a proximity-biotinylation map. Uninformative as a molecular function.
Reason: High-throughput proximity-labeling dataset; no specific functional insight.
Supporting Evidence:
PMID:35271311
We combined genome engineering, confocal live-cell imaging, mass spectrometry and data science to systematically map the localization and interactions of human proteins.
|
|
GO:0005515
protein binding
|
IPI
PMID:40205054 Multimodal cell maps as a foundation for structural and func... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation. Uninformative as a molecular function.
Reason: Records an interaction but the generic term is not elevated.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:40205054
|
|
GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: Direct cytosol localization. Consistent with 4EHP's cytosolic function.
Reason: Cytosolic localization is experimentally supported.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:1990261
pre-mRNA catabolic process
|
NAS
PMID:33053355 4EHP and GIGYF1/2 Mediate Translation-Coupled Messenger RNA ... |
MODIFY |
Summary: ComplexPortal-derived annotation reflecting the 4EHP-GIGYF co-translational mRNA- decay complex. The biology is correct but 'pre-mRNA catabolic process' is imprecise; substrates are mature mRNAs.
Reason: The complex triggers co-translational decay of mature mRNAs, not pre-mRNA turnover.
Proposed replacements:
nuclear-transcribed mRNA catabolic process
Supporting Evidence:
PMID:33053355
4EHP and GIGYF1/2 Mediate Translation-Coupled Messenger RNA Decay.
|
|
GO:0098808
mRNA cap binding
|
IDA
PMID:17368478 Structures of the human eIF4E homologous protein, h4EHP, in ... |
ACCEPT |
Summary: Direct evidence for mRNA cap binding (m7GTP-bound crystal structure). Core MF.
Reason: Structural and biochemical data directly demonstrate cap binding by 4EHP.
Supporting Evidence:
PMID:17368478
Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
|
|
GO:0000340
RNA 7-methylguanosine cap binding
|
IDA
PMID:35878012 SARS-CoV-2 impairs interferon production via NSP2-induced re... |
ACCEPT |
Summary: Direct evidence for m7G cap binding in the context of IFNB1 repression. Core MF.
Reason: 4EHP cap binding is required for its repression of target mRNAs including IFNB1.
Supporting Evidence:
PMID:35878012
SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
|
|
GO:0045947
negative regulation of translational initiation
|
IDA
PMID:32726578 GIGYF2 and 4EHP Inhibit Translation Initiation of Defective ... |
ACCEPT |
Summary: Core function: 4EHP (with GIGYF2) inhibits translation initiation on defective/ ribosome-stalling mRNAs as part of RQC.
Reason: Direct evidence places 4EHP/GIGYF2 as inhibitors of initiation on faulty messages.
Supporting Evidence:
PMID:32726578
GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control.
|
|
GO:0045947
negative regulation of translational initiation
|
IDA
PMID:35878012 SARS-CoV-2 impairs interferon production via NSP2-induced re... |
ACCEPT |
Summary: 4EHP/GIGYF2 repress IFNB1 translation initiation; co-opted by SARS-CoV-2 nsp2. Supports the core repressor function.
Reason: Direct evidence of 4EHP-mediated repression of IFNB1 translation.
Supporting Evidence:
PMID:35878012
SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
|
|
GO:0060339
negative regulation of type I interferon-mediated signaling pathway
|
IDA
PMID:35878012 SARS-CoV-2 impairs interferon production via NSP2-induced re... |
KEEP AS NON CORE |
Summary: 4EHP/GIGYF2 repress IFNB1 (type I IFN) translation. A genuine, context-specific role rather than the core, ubiquitous function.
Reason: The IFN-repression role is a specific outcome of 4EHP's general repression activity on IFNB1 mRNA, exploited during SARS-CoV-2 infection.
Supporting Evidence:
PMID:35878012
SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
|
|
GO:0072344
rescue of stalled cytosolic ribosome
|
IDA
PMID:32726578 GIGYF2 and 4EHP Inhibit Translation Initiation of Defective ... |
ACCEPT |
Summary: 4EHP (with GIGYF2) participates in ribosome-associated quality control by suppressing new initiation on ribosome-stalling mRNAs. Core RQC function.
Reason: Direct evidence places 4EHP/GIGYF2 in the RQC response acting in parallel with degradation of the stalled nascent chain.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-uniprot.txt
sequestering the mRNA cap, blocking
|
|
GO:0035278
miRNA-mediated gene silencing by inhibition of translation
|
IDA
PMID:28487484 Cap-binding protein 4EHP effects translation silencing by mi... |
ACCEPT |
Summary: 4EHP is an integral component of miRNA-mediated silencing; its cap-binding activity contributes to translational silencing of miRNA targets via 4E-T and CCR4-NOT.
Reason: Direct evidence that 4EHP cap binding contributes to miRNA-mediated translational silencing.
Supporting Evidence:
PMID:28487484
4EHP is an integral component of the miRNA-mediated silencing machinery.
|
|
GO:0005515
protein binding
|
IPI
PMID:31439631 Molecular basis for GIGYF-Me31B complex assembly in 4EHP-med... |
KEEP AS NON CORE |
Summary: IPI annotation for the direct 4EHP-GIGYF interaction (via the GIGYF 4EHP-binding motif). Functionally central but 'protein binding' is too generic; the GIGYF-binding interaction underlies repression.
Reason: The 4EHP-GIGYF interaction is the basis of the repressor complex, but the generic term is not elevated; the cap-binding MF and repression BP capture 4EHP's function.
Supporting Evidence:
PMID:31439631
Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
|
|
GO:0000932
P-body
|
IDA
PMID:23991149 Investigating the consequences of eIF4E2 (4EHP) interaction ... |
ACCEPT |
Summary: Direct P-body localization, consistent with 4EHP's role in repressed-mRNP/miRNA silencing.
Reason: 4EHP localizes to P-bodies, consistent with its repression function.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:0005515
protein binding
|
IPI
PMID:23991149 Investigating the consequences of eIF4E2 (4EHP) interaction ... |
KEEP AS NON CORE |
Summary: IPI annotation for the 4EHP-4E-T (EIF4ENIF1) interaction, which influences 4EHP's cellular distribution. Real but the generic term is uninformative.
Reason: Records the 4E-T interaction relevant to localization/silencing, but 'protein binding' is not elevated.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:0005515
protein binding
|
IPI
PMID:28487484 Cap-binding protein 4EHP effects translation silencing by mi... |
KEEP AS NON CORE |
Summary: IPI annotation from the miRNA-silencing study (interactions with 4E-T/CCR4-NOT machinery). The functional role is captured by the miRNA-silencing BP.
Reason: Records silencing-machinery interactions; the generic term is not elevated.
Supporting Evidence:
PMID:28487484
4EHP is an integral component of the miRNA-mediated silencing machinery.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:23991149 Investigating the consequences of eIF4E2 (4EHP) interaction ... |
ACCEPT |
Summary: Direct cytoplasmic localization.
Reason: 4EHP is a cytoplasmic protein, supported by direct evidence.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:0003723
RNA binding
|
HDA
PMID:22681889 The mRNA-bound proteome and its global occupancy profile on ... |
KEEP AS NON CORE |
Summary: RNA binding from a proteome-wide mRNA-interactome capture study. Subsumed by the specific cap-binding MF.
Reason: Correct but less informative than RNA 7-methylguanosine cap binding.
Supporting Evidence:
file:human/EIF4E2/EIF4E2-goa.tsv
PMID:22681889
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-1678842 |
ACCEPT |
Summary: Cytosol localization (Reactome TAS). Consistent with 4EHP's cytosolic function.
Reason: Cytosolic localization is well supported.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-1678843 |
ACCEPT |
Summary: Duplicate cytosol localization (Reactome TAS).
Reason: Cytosolic localization is well supported.
Supporting Evidence:
PMID:23991149
Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
|
|
GO:0017148
negative regulation of translation
|
IMP
PMID:22751931 A novel 4EHP-GIGYF2 translational repressor complex is essen... |
ACCEPT |
Summary: Genetic/biochemical evidence that the 4EHP-GIGYF2 complex represses translation; disruption increases translation and causes perinatal lethality in mice. Core.
Reason: Disruption of the m4EHP-GIGYF2 complex increases translation, directly demonstrating 4EHP's negative regulation of translation.
Supporting Evidence:
PMID:22751931
A novel 4EHP-GIGYF2 translational repressor complex is essential for mammalian development.
|
|
GO:0031625
ubiquitin protein ligase binding
|
IPI
PMID:14623119 Human homologue of ariadne promotes the ubiquitylation of tr... |
ACCEPT |
Summary: 4EHP binds the RBR E3 ligase ARIH1/HHARI, which promotes its ubiquitylation. A real, specific interaction (4EHP is the substrate/partner, not the ligase).
Reason: Direct evidence that HHARI/ARIH1 (a ubiquitin protein ligase) interacts with and ubiquitylates 4EHP.
Supporting Evidence:
PMID:14623119
Human homologue of ariadne promotes the ubiquitylation of translation initiation factor 4E homologous protein, 4EHP.
|
|
GO:0005515
protein binding
|
IPI
PMID:17368478 Structures of the human eIF4E homologous protein, h4EHP, in ... |
KEEP AS NON CORE |
Summary: Generic protein-binding annotation from the structural/cap-binding study. The informative MF (cap binding) is captured separately.
Reason: Records interactions in the structural study; the generic term is not elevated.
Supporting Evidence:
PMID:17368478
Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
|
|
GO:0000339
RNA cap binding
|
TAS
PMID:9582349 Cloning and characterization of 4EHP, a novel mammalian eIF4... |
ACCEPT |
Summary: Cap binding (TAS, original characterization). 4EHP is an eIF4E-related cap-binding protein. Core MF.
Reason: The original cloning/characterization established 4EHP as a cap-binding protein.
Supporting Evidence:
PMID:9582349
Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein.
|
|
GO:0008135
translation factor activity, RNA binding
|
TAS
PMID:9582349 Cloning and characterization of 4EHP, a novel mammalian eIF4... |
KEEP AS NON CORE |
Summary: Broad 'translation factor activity, RNA binding' term applied to 4EHP. Given that 4EHP acts as a translational repressor rather than a productive factor, a repressor/ regulator MF is more accurate, but the cap-binding RNA activity is genuine.
Reason: 4EHP is an RNA(cap)-binding translation regulator; this broad factor MF is acceptable but less informative than the specific cap-binding MF and the negative-regulation BP.
Supporting Evidence:
PMID:9582349
Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein.
|
Q: Under what conditions, if any, does 4EHP support (rather than repress) cap-dependent translation of specific mRNAs, and how is the switch between repressor and any positive role regulated?
Q: How is 4EHP partitioned among its distinct repressor complexes (GIGYF1/2-RQC, 4E-T/CCR4-NOT miRNA silencing), and does ARIH1-mediated ubiquitylation regulate this?
Experiment: Cap-binding separation-of-function mutants of 4EHP tested in RQC reporter assays versus miRNA-silencing reporters to dissect the contributions of cap binding to each pathway.
Experiment: Quantitative proteomics of 4EHP complexes (GIGYF1/2, ZNF598, 4E-T, CCR4-NOT) across conditions to map context-dependent complex assembly and target mRNA selection.
eIF4E homologous protein (4EHP). Class II eIF4E-family cap-binding protein.
4EHP binds the m7G cap but cannot recruit eIF4G, so it competes with eIF4E and blocks
eIF4F assembly, repressing cap-dependent translation initiation.
UniProt: "Component of the 4EHP-GYF2 complex ... In association with GIGYF2, assists
ribosome-associated quality control (RQC) by sequestering the mRNA cap, blocking ribosome
initiation and decreasing the translational load on problematic messages."
[PMID:32726578 RQC; PMID:22751931 development].
PMID:28487484 Also controls IFNB1 via miR-34a negative feedback. P-body localization.
nsp2-GIGYF2 enhances GIGYF2-EIF4E2 binding to repress IFNB1 translation PMID:35878012.
PMID:14623119 -> GO:0031625 ubiquitin protein ligase
binding (HHARI/ARIH1). Real interaction.
*-deep-research*.md file found in this gene directory.Translation|Cytosolic translation|Translation initiation|eIF4F complex AND Translation|Cytosolic translation|Ribosome-associated QC|other RQC processes ; PN-node mapping: initiation type=mappedβGO:0016281 (eIF4F complex); initiation group=mappedβGO:0006413; RQC group=mappedβGO:0006515; RQC type=no_mapping; class/branch context_only (GO:0002181/GO:0006412 too_broad).This file is generated from the current PROTEOSTASIS phase-1 dossier and local gene-review artifacts. Edit the source review, PN mapping, or dossier rather than this generated note when correcting the underlying curation.
id: O60573
gene_symbol: EIF4E2
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: >-
EIF4E2 (eIF4E homologous protein, 4EHP) is a class II member of the eIF4E cap-binding
protein family. It recognizes and binds the 7-methylguanosine (m7G) mRNA 5' cap but,
unlike the canonical eIF4E, cannot bind the scaffold eIF4G; it therefore competes with
eIF4E for the cap and blocks assembly of the eIF4F initiation complex, acting as a
repressor of cap-dependent translation initiation rather than a promoter of it. 4EHP is
the catalytic-cap-binding core of the 4EHP-GIGYF2 translational-repressor module: bound
to GIGYF2 (and ZNF598/DDX6) it sequesters the cap of specific mRNAs to suppress their
translation, including as part of ribosome-associated quality control, where it lowers
the translational load on messages that cause ribosome stalling. 4EHP is also an integral
component of miRNA-mediated silencing, contributing cap-binding activity that, via 4E-T
and the CCR4-NOT complex, represses translation of miRNA targets, and it mediates miR-34a-
directed negative-feedback control of IFNB1 (type I interferon) production - a circuit
co-opted by SARS-CoV-2 nsp2. It localizes to the cytoplasm and to P-bodies and is itself
a substrate for ubiquitylation by the RBR E3 ligase ARIH1/HHARI.
existing_annotations:
- term:
id: GO:0000340
label: RNA 7-methylguanosine cap binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
4EHP binds the m7G mRNA cap - its defining, structurally confirmed molecular
function and the basis of its repressor activity. Core.
action: ACCEPT
reason: >-
Cap binding is established by structural and biochemical studies and underlies the
competitive repression of cap-dependent initiation.
supported_by:
- reference_id: PMID:17368478
supporting_text: Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
- term:
id: GO:0003743
label: translation initiation factor activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Phylogenetic transfer from the eIF4E family. 4EHP is NOT a canonical initiation
factor - it cannot bind eIF4G and represses rather than promotes initiation. This
MF is misleading for 4EHP.
action: MODIFY
reason: >-
Unlike eIF4E, 4EHP cannot recruit eIF4G and does not promote initiation; it competes
for the cap to block eIF4F assembly. A translation-repressor MF is appropriate, not
'translation initiation factor activity'.
proposed_replacement_terms:
- id: GO:0045182
label: translation regulator activity
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-uniprot.txt
supporting_text: it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
- term:
id: GO:0006413
label: translational initiation
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
Phylogenetic transfer. 4EHP participates in initiation only as a repressor; the
generic 'translational initiation' over-states a positive role.
action: MARK_AS_OVER_ANNOTATED
reason: >-
4EHP represses, rather than mediates, cap-dependent initiation; the specific role is
better captured by negative regulation of translational initiation.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-uniprot.txt
supporting_text: it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
- term:
id: GO:0016281
label: eukaryotic translation initiation factor 4F complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: >-
Phylogenetic transfer from eIF4E. 4EHP is NOT a component of the productive eIF4F
complex - it specifically lacks eIF4G binding and functions in distinct repressor
complexes (4EHP-GIGYF2). This CC assignment is incorrect for 4EHP.
action: REMOVE
reason: >-
4EHP cannot bind eIF4G and does not assemble into eIF4F; the annotation is an
erroneous family-level transfer.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-uniprot.txt
supporting_text: it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
- term:
id: GO:0000932
label: P-body
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
P-body localization. Consistent with 4EHP's role in miRNA-mediated repression and
mRNA storage/decay; corroborated by IDA.
action: ACCEPT
reason: >-
4EHP localizes to P-bodies and acts there in miRNA silencing.
supported_by:
- reference_id: PMID:28487484
supporting_text: Cap-binding protein 4EHP effects translation silencing by microRNAs.
- term:
id: GO:0003723
label: RNA binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
Generic RNA binding (IEA). 4EHP binds the m7G cap of mRNAs; the more specific cap-
binding MF is the informative term.
action: KEEP_AS_NON_CORE
reason: >-
Correct but subsumed by the specific RNA 7-methylguanosine cap binding annotation.
supported_by:
- reference_id: PMID:17368478
supporting_text: Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
- term:
id: GO:0003743
label: translation initiation factor activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
Electronic transfer. As with the IBA, 4EHP is a cap-binding repressor, not a
productive initiation factor.
action: MODIFY
reason: >-
4EHP does not promote initiation; a translation-regulator/repressor MF is correct.
proposed_replacement_terms:
- id: GO:0045182
label: translation regulator activity
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-uniprot.txt
supporting_text: it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: >-
Cytoplasmic localization (IEA). Consistent with 4EHP's cytosolic translation-
repression activity.
action: ACCEPT
reason: >-
4EHP is a cytoplasmic cap-binding protein; supported by direct evidence.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:0006413
label: translational initiation
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
Electronic transfer over-stating a positive initiation role.
action: MARK_AS_OVER_ANNOTATED
reason: >-
4EHP represses cap-dependent initiation; the positive 'translational initiation'
involvement is misleading.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-uniprot.txt
supporting_text: it is unable to bind eIF4G (EIF4G1, EIF4G2 or EIF4G3),
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15094042
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:15094042
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15161933
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation from an mRNA-degradation interaction
framework. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:15161933
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16189514
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:16189514
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19060904
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:19060904
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:22678294
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:22678294
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: >-
Generic protein-binding annotation from the HI-III human interactome (Y2H). Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Large-scale interactome screen; no specific functional insight.
supported_by:
- reference_id: PMID:25416956
supporting_text: A proteome-scale map of the human interactome network.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25959826
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:25959826
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28514442
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:28514442
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31515488
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:31515488
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32814053
qualifier: enables
review:
summary: >-
Generic protein-binding annotation from a neurodegenerative-disease interactome mapping study. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
High-throughput interactome dataset; no specific functional insight.
supported_by:
- reference_id: PMID:32814053
supporting_text: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
qualifier: enables
review:
summary: >-
Generic protein-binding annotation from the BioPlex interactome. Uninformative as a
molecular function.
action: KEEP_AS_NON_CORE
reason: >-
High-throughput AP-MS interactome; the meaningful GIGYF1/GIGYF2 interactions are
captured separately.
supported_by:
- reference_id: PMID:33961781
supporting_text: Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35271311
qualifier: enables
review:
summary: >-
Generic protein-binding annotation from a proximity-biotinylation map. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
High-throughput proximity-labeling dataset; no specific functional insight.
supported_by:
- reference_id: PMID:35271311
supporting_text: >-
We combined genome engineering, confocal live-cell imaging, mass spectrometry and data
science to systematically map the localization and interactions of human proteins.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:40205054
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation. Uninformative as a molecular function.
action: KEEP_AS_NON_CORE
reason: >-
Records an interaction but the generic term is not elevated.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:40205054
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: >-
Direct cytosol localization. Consistent with 4EHP's cytosolic function.
action: ACCEPT
reason: >-
Cytosolic localization is experimentally supported.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:1990261
label: pre-mRNA catabolic process
evidence_type: NAS
original_reference_id: PMID:33053355
qualifier: involved_in
review:
summary: >-
ComplexPortal-derived annotation reflecting the 4EHP-GIGYF co-translational mRNA-
decay complex. The biology is correct but 'pre-mRNA catabolic process' is imprecise;
substrates are mature mRNAs.
action: MODIFY
reason: >-
The complex triggers co-translational decay of mature mRNAs, not pre-mRNA turnover.
proposed_replacement_terms:
- id: GO:0000956
label: nuclear-transcribed mRNA catabolic process
supported_by:
- reference_id: PMID:33053355
supporting_text: 4EHP and GIGYF1/2 Mediate Translation-Coupled Messenger RNA Decay.
- term:
id: GO:0098808
label: mRNA cap binding
evidence_type: IDA
original_reference_id: PMID:17368478
qualifier: enables
review:
summary: >-
Direct evidence for mRNA cap binding (m7GTP-bound crystal structure). Core MF.
action: ACCEPT
reason: >-
Structural and biochemical data directly demonstrate cap binding by 4EHP.
supported_by:
- reference_id: PMID:17368478
supporting_text: Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
- term:
id: GO:0000340
label: RNA 7-methylguanosine cap binding
evidence_type: IDA
original_reference_id: PMID:35878012
qualifier: enables
review:
summary: >-
Direct evidence for m7G cap binding in the context of IFNB1 repression. Core MF.
action: ACCEPT
reason: >-
4EHP cap binding is required for its repression of target mRNAs including IFNB1.
supported_by:
- reference_id: PMID:35878012
supporting_text: SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
- term:
id: GO:0045947
label: negative regulation of translational initiation
evidence_type: IDA
original_reference_id: PMID:32726578
qualifier: involved_in
review:
summary: >-
Core function: 4EHP (with GIGYF2) inhibits translation initiation on defective/
ribosome-stalling mRNAs as part of RQC.
action: ACCEPT
reason: >-
Direct evidence places 4EHP/GIGYF2 as inhibitors of initiation on faulty messages.
supported_by:
- reference_id: PMID:32726578
supporting_text: GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control.
- term:
id: GO:0045947
label: negative regulation of translational initiation
evidence_type: IDA
original_reference_id: PMID:35878012
qualifier: involved_in
review:
summary: >-
4EHP/GIGYF2 repress IFNB1 translation initiation; co-opted by SARS-CoV-2 nsp2.
Supports the core repressor function.
action: ACCEPT
reason: >-
Direct evidence of 4EHP-mediated repression of IFNB1 translation.
supported_by:
- reference_id: PMID:35878012
supporting_text: SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
- term:
id: GO:0060339
label: negative regulation of type I interferon-mediated signaling pathway
evidence_type: IDA
original_reference_id: PMID:35878012
qualifier: involved_in
review:
summary: >-
4EHP/GIGYF2 repress IFNB1 (type I IFN) translation. A genuine, context-specific role
rather than the core, ubiquitous function.
action: KEEP_AS_NON_CORE
reason: >-
The IFN-repression role is a specific outcome of 4EHP's general repression activity on
IFNB1 mRNA, exploited during SARS-CoV-2 infection.
supported_by:
- reference_id: PMID:35878012
supporting_text: SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
- term:
id: GO:0072344
label: rescue of stalled cytosolic ribosome
evidence_type: IDA
original_reference_id: PMID:32726578
qualifier: involved_in
review:
summary: >-
4EHP (with GIGYF2) participates in ribosome-associated quality control by suppressing
new initiation on ribosome-stalling mRNAs. Core RQC function.
action: ACCEPT
reason: >-
Direct evidence places 4EHP/GIGYF2 in the RQC response acting in parallel with
degradation of the stalled nascent chain.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-uniprot.txt
supporting_text: sequestering the mRNA cap, blocking
- term:
id: GO:0035278
label: miRNA-mediated gene silencing by inhibition of translation
evidence_type: IDA
original_reference_id: PMID:28487484
qualifier: acts_upstream_of_positive_effect
review:
summary: >-
4EHP is an integral component of miRNA-mediated silencing; its cap-binding activity
contributes to translational silencing of miRNA targets via 4E-T and CCR4-NOT.
action: ACCEPT
reason: >-
Direct evidence that 4EHP cap binding contributes to miRNA-mediated translational
silencing.
supported_by:
- reference_id: PMID:28487484
supporting_text: 4EHP is an integral component of the miRNA-mediated silencing machinery.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31439631
qualifier: enables
review:
summary: >-
IPI annotation for the direct 4EHP-GIGYF interaction (via the GIGYF 4EHP-binding
motif). Functionally central but 'protein binding' is too generic; the GIGYF-binding
interaction underlies repression.
action: KEEP_AS_NON_CORE
reason: >-
The 4EHP-GIGYF interaction is the basis of the repressor complex, but the generic
term is not elevated; the cap-binding MF and repression BP capture 4EHP's function.
supported_by:
- reference_id: PMID:31439631
supporting_text: Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
- term:
id: GO:0000932
label: P-body
evidence_type: IDA
original_reference_id: PMID:23991149
qualifier: located_in
review:
summary: >-
Direct P-body localization, consistent with 4EHP's role in repressed-mRNP/miRNA
silencing.
action: ACCEPT
reason: >-
4EHP localizes to P-bodies, consistent with its repression function.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23991149
qualifier: enables
review:
summary: >-
IPI annotation for the 4EHP-4E-T (EIF4ENIF1) interaction, which influences 4EHP's
cellular distribution. Real but the generic term is uninformative.
action: KEEP_AS_NON_CORE
reason: >-
Records the 4E-T interaction relevant to localization/silencing, but 'protein binding'
is not elevated.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28487484
qualifier: enables
review:
summary: >-
IPI annotation from the miRNA-silencing study (interactions with 4E-T/CCR4-NOT
machinery). The functional role is captured by the miRNA-silencing BP.
action: KEEP_AS_NON_CORE
reason: >-
Records silencing-machinery interactions; the generic term is not elevated.
supported_by:
- reference_id: PMID:28487484
supporting_text: 4EHP is an integral component of the miRNA-mediated silencing machinery.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:23991149
qualifier: located_in
review:
summary: >-
Direct cytoplasmic localization.
action: ACCEPT
reason: >-
4EHP is a cytoplasmic protein, supported by direct evidence.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:0003723
label: RNA binding
evidence_type: HDA
original_reference_id: PMID:22681889
qualifier: enables
review:
summary: >-
RNA binding from a proteome-wide mRNA-interactome capture study. Subsumed by the
specific cap-binding MF.
action: KEEP_AS_NON_CORE
reason: >-
Correct but less informative than RNA 7-methylguanosine cap binding.
supported_by:
- reference_id: file:human/EIF4E2/EIF4E2-goa.tsv
supporting_text: PMID:22681889
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1678842
qualifier: located_in
review:
summary: >-
Cytosol localization (Reactome TAS). Consistent with 4EHP's cytosolic function.
action: ACCEPT
reason: >-
Cytosolic localization is well supported.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-1678843
qualifier: located_in
review:
summary: >-
Duplicate cytosol localization (Reactome TAS).
action: ACCEPT
reason: >-
Cytosolic localization is well supported.
supported_by:
- reference_id: PMID:23991149
supporting_text: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
- term:
id: GO:0017148
label: negative regulation of translation
evidence_type: IMP
original_reference_id: PMID:22751931
qualifier: acts_upstream_of_or_within
review:
summary: >-
Genetic/biochemical evidence that the 4EHP-GIGYF2 complex represses translation;
disruption increases translation and causes perinatal lethality in mice. Core.
action: ACCEPT
reason: >-
Disruption of the m4EHP-GIGYF2 complex increases translation, directly demonstrating
4EHP's negative regulation of translation.
supported_by:
- reference_id: PMID:22751931
supporting_text: A novel 4EHP-GIGYF2 translational repressor complex is essential for mammalian development.
- term:
id: GO:0031625
label: ubiquitin protein ligase binding
evidence_type: IPI
original_reference_id: PMID:14623119
qualifier: enables
review:
summary: >-
4EHP binds the RBR E3 ligase ARIH1/HHARI, which promotes its ubiquitylation. A real,
specific interaction (4EHP is the substrate/partner, not the ligase).
action: ACCEPT
reason: >-
Direct evidence that HHARI/ARIH1 (a ubiquitin protein ligase) interacts with and
ubiquitylates 4EHP.
supported_by:
- reference_id: PMID:14623119
supporting_text: Human homologue of ariadne promotes the ubiquitylation of translation initiation factor 4E homologous protein, 4EHP.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:17368478
qualifier: enables
review:
summary: >-
Generic protein-binding annotation from the structural/cap-binding study. The
informative MF (cap binding) is captured separately.
action: KEEP_AS_NON_CORE
reason: >-
Records interactions in the structural study; the generic term is not elevated.
supported_by:
- reference_id: PMID:17368478
supporting_text: Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
- term:
id: GO:0000339
label: RNA cap binding
evidence_type: TAS
original_reference_id: PMID:9582349
qualifier: enables
review:
summary: >-
Cap binding (TAS, original characterization). 4EHP is an eIF4E-related cap-binding
protein. Core MF.
action: ACCEPT
reason: >-
The original cloning/characterization established 4EHP as a cap-binding protein.
supported_by:
- reference_id: PMID:9582349
supporting_text: Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein.
- term:
id: GO:0008135
label: translation factor activity, RNA binding
evidence_type: TAS
original_reference_id: PMID:9582349
qualifier: enables
review:
summary: >-
Broad 'translation factor activity, RNA binding' term applied to 4EHP. Given that
4EHP acts as a translational repressor rather than a productive factor, a repressor/
regulator MF is more accurate, but the cap-binding RNA activity is genuine.
action: KEEP_AS_NON_CORE
reason: >-
4EHP is an RNA(cap)-binding translation regulator; this broad factor MF is acceptable
but less informative than the specific cap-binding MF and the negative-regulation BP.
supported_by:
- reference_id: PMID:9582349
supporting_text: Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein.
core_functions:
- description: >-
4EHP recognizes and binds the m7G mRNA 5' cap. Because it cannot recruit eIF4G, cap
binding by 4EHP competes with eIF4E and blocks eIF4F assembly, the molecular basis of
its translational-repressor activity.
molecular_function:
id: GO:0000340
label: RNA 7-methylguanosine cap binding
locations:
- id: GO:0005829
label: cytosol
- id: GO:0000932
label: P-body
supported_by:
- reference_id: PMID:17368478
supporting_text: Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
- description: >-
As the cap-binding core of the 4EHP-GIGYF2 module (with GIGYF1/2, ZNF598 and DDX6) and of
miRNA/CCR4-NOT silencing, 4EHP represses cap-dependent translation initiation of specific
mRNAs, including ribosome-stalling messages in ribosome-associated quality control.
molecular_function:
id: GO:0000340
label: RNA 7-methylguanosine cap binding
locations:
- id: GO:0005829
label: cytosol
supported_by:
- reference_id: PMID:32726578
supporting_text: GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control.
directly_involved_in:
- id: GO:0045947
label: negative regulation of translational initiation
proposed_new_terms: []
suggested_questions:
- question: Under what conditions, if any, does 4EHP support (rather than repress) cap-dependent translation of specific mRNAs, and how is the switch between repressor and any positive role regulated?
- question: How is 4EHP partitioned among its distinct repressor complexes (GIGYF1/2-RQC, 4E-T/CCR4-NOT miRNA silencing), and does ARIH1-mediated ubiquitylation regulate this?
suggested_experiments:
- description: Cap-binding separation-of-function mutants of 4EHP tested in RQC reporter assays versus miRNA-silencing reporters to dissect the contributions of cap binding to each pathway.
- description: Quantitative proteomics of 4EHP complexes (GIGYF1/2, ZNF598, 4E-T, CCR4-NOT) across conditions to map context-dependent complex assembly and target mRNA selection.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:14623119
title: Human homologue of ariadne promotes the ubiquitylation of translation initiation factor 4E homologous protein, 4EHP.
findings:
- statement: The RBR E3 ligase HHARI/ARIH1 interacts with 4EHP and promotes its polyubiquitylation.
reference_section_type: ABSTRACT
- id: PMID:15094042
title: 'Characterizing the interaction of the mammalian eIF4E-related protein 4EHP with 4E-BP1.'
findings: []
- id: PMID:15161933
title: Comprehensive proteomic analysis of interphase and mitotic 14-3-3-binding proteins.
findings: []
- id: PMID:16189514
title: Towards a proteome-scale map of the human protein-protein interaction network.
findings: []
- id: PMID:17368478
title: Structures of the human eIF4E homologous protein, h4EHP, in its m7GTP-bound and unliganded forms.
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: "Cached publications/PMID_17368478.md title matches YAML; crystal structures of h4EHP in m7GTP-bound/unliganded forms establish the core MF (m7G cap binding, GO:0000340). GOA also anchors this PMID to cap binding (GO:0098808, IDA)."
findings:
- statement: 4EHP binds the m7G cap; crystal structures resolve 4EHP in m7GTP-bound and unliganded forms.
reference_section_type: ABSTRACT
- id: PMID:19060904
title: An empirical framework for binary interactome mapping.
findings: []
- id: PMID:22678294
title: 'An oxygen-regulated switch in the protein synthesis machinery.'
findings: []
- id: PMID:22681889
title: The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts.
findings: []
- id: PMID:22751931
title: A novel 4EHP-GIGYF2 translational repressor complex is essential for mammalian development.
findings:
- statement: Disruption of the m4EHP-GIGYF2 complex increases translation and causes perinatal lethality in mice, demonstrating 4EHP's repressor function.
reference_section_type: ABSTRACT
- id: PMID:23991149
title: Investigating the consequences of eIF4E2 (4EHP) interaction with 4E-transporter on its cellular distribution in HeLa cells.
findings:
- statement: 4EHP interacts with 4E-T (EIF4ENIF1), which influences its cytoplasmic and P-body distribution.
reference_section_type: ABSTRACT
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:25959826
title: Quantitative interaction proteomics of neurodegenerative disease proteins.
findings: []
- id: PMID:28487484
title: Cap-binding protein 4EHP effects translation silencing by microRNAs.
findings:
- statement: 4EHP is an integral component of the miRNA-mediated silencing machinery; its cap-binding activity contributes to translational silencing of miRNA targets via 4E-T and the CCR4-NOT complex.
reference_section_type: ABSTRACT
- id: PMID:28514442
title: Architecture of the human interactome defines protein communities and disease networks.
findings: []
- id: PMID:31439631
title: Molecular basis for GIGYF-Me31B complex assembly in 4EHP-mediated translational repression.
findings:
- statement: 4EHP assembles with GIGYF and DDX6 into a translational-repressor complex; GIGYF binds 4EHP via a dedicated 4EHP-binding motif.
reference_section_type: RESULTS
- id: PMID:31515488
title: Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.
findings: []
- id: PMID:32726578
title: GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control.
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: "Cached publications/PMID_32726578.md title matches YAML; establishes 4EHP/GIGYF2 repression of translation initiation on defective mRNAs in RQC, the core BP. GOA anchors this PMID to GO:0045947 (negative regulation of translational initiation, IDA)."
findings:
- statement: 4EHP and GIGYF2 inhibit translation initiation on defective, ribosome-stalling mRNAs as a negative-feedback RQC mechanism.
reference_section_type: ABSTRACT
- id: PMID:32814053
title: Interactome Mapping Provides a Network of Neurodegenerative Disease Proteins and Uncovers Widespread Protein Aggregation in Affected Brains.
findings: []
- id: PMID:33053355
title: 4EHP and GIGYF1/2 Mediate Translation-Coupled Messenger RNA Decay.
findings:
- statement: 4EHP-GIGYF1/2 complexes trigger co-translational mRNA decay of transcripts that experience ribosome pausing.
reference_section_type: ABSTRACT
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
findings: []
- id: PMID:35271311
title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
findings: []
- id: PMID:35878012
title: SARS-CoV-2 impairs interferon production via NSP2-induced repression of mRNA translation.
findings:
- statement: SARS-CoV-2 nsp2 enhances GIGYF2-EIF4E2 association to repress IFNB1 translation, dampening the type I interferon response; 4EHP cap binding is required.
reference_section_type: ABSTRACT
- id: PMID:40205054
title: Multimodal cell maps as a foundation for structural and functional genomics.
findings: []
- id: PMID:9582349
title: Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein.
findings:
- statement: 4EHP was cloned and characterized as a novel mammalian eIF4E-related cap- binding protein.
reference_section_type: ABSTRACT
- id: Reactome:R-HSA-1678842
title: Reactome pathway annotation (cytosol localization)
findings: []
- id: Reactome:R-HSA-1678843
title: Reactome pathway annotation (cytosol localization)
findings: []
- id: file:human/EIF4E2/EIF4E2-uniprot.txt
title: UniProt entry O60573 (IF4E2_HUMAN)
findings: []
- id: file:human/EIF4E2/EIF4E2-goa.tsv
title: GOA annotations for EIF4E2
findings: []