Galectin-3 (Mac-2, CBP35, IgE-binding protein) is the only chimera-type member of the galectin family of beta-galactoside-binding lectins. It comprises a single C-terminal carbohydrate-recognition domain (CRD), which binds beta-galactosides such as lactose and N-acetyllactosamine (LacNAc), joined to an intrinsically disordered, proline/glycine-rich N-terminal tail. Although the protein is monomeric, the N-terminal tail mediates concentration-dependent self-association and liquid-liquid phase separation, giving galectin-3 functional multivalency so that it cross-links glycoconjugates into ordered lattices and agglutinates glycosylated cells and particles. Galectin-3 acts both intracellularly and extracellularly. Inside the cell it is found in the cytoplasm and nucleus (where it has been implicated as a pre-mRNA splicing factor and RNA-binding protein) and, together with TRIM16, it senses ruptured endo/lysosomal membranes by recognizing newly exposed luminal glycans and helps mobilize the autophagy machinery. It reaches the cell surface and extracellular space through a non-classical, TMED10-facilitated secretory route. Extracellularly it modulates cell adhesion, cross-links cell-surface glycoproteins (including branched N-glycans generated by GnT-V), acts as a chemoattractant for monocytes and macrophages, regulates T-cell, NK-cell and innate-lymphoid-cell activation and apoptosis, and contributes to inflammation, fibrosis and tumor biology. Its high-resolution CRD structure and beta-galactoside specificity make it a prominent drug target.
Definition: The process of cross-linking multivalent glycoconjugates (glycoproteins and glycolipids) on a cell surface or in the extracellular matrix into an ordered, higher-order lattice by a galectin, regulating the residence time, clustering, and signaling of the cross-linked glycoproteins.
Justification: Galectin-3 (and other galectins) form 'galectin-glycan lattices' that retain receptors at the cell surface and modulate their endocytosis and signaling. Current GO terms (carbohydrate binding, molecular condensate scaffold activity, negative regulation of endocytosis, positive regulation of protein localization to plasma membrane) only capture facets of this distinctive, well-described mechanism, with no single term for the lattice assembly process itself.
Supporting Evidence:
Definition: Binding to luminal glycans that become exposed on the cytosolic face of ruptured endosomal or lysosomal membranes, marking the damaged compartment for autophagic clearance.
Justification: Galectin-3 (with TRIM16) senses ruptured endo/lysosomal membranes by recognizing newly exposed luminal glycans and mobilizes the autophagy machinery (lysophagy). This glycan-damage-sensing role is mechanistically distinct from generic carbohydrate binding and is increasingly central to galectin-3 biology, but is not represented by a dedicated MF term.
Supporting Evidence:
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
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GO:0031012
extracellular matrix
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 is secreted and functions extracellularly, cross-linking ECM glycoproteins (e.g. laminin) into lattices. Extracellular matrix as a site of action is consistent with the lectin/lattice function, though it is a downstream/extracellular role rather than the gene's primary intracellular biology.
Reason: Well-supported extracellular site of action via phylogenetic inference, but a pleiotropic extracellular localization rather than a core defining feature.
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|
GO:0048030
disaccharide binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Galectin-3 binds beta-galactoside disaccharides such as lactose and LacNAc through its CRD. This is a more specific child of carbohydrate binding and accurately captures the core lectin activity.
Reason: Disaccharide (beta-galactoside) binding is phylogenetically conserved and central to galectin-3 function; well supported experimentally.
Supporting Evidence:
PMID:11434930
Recognized by its specificity for galactose, a detailed characterization of its sugar binding ability has been investigated by isothermal titration calorimetry.
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GO:0005634
nucleus
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Galectin-3 is present and active in the nucleus (implicated as a pre-mRNA splicing factor and RNA-binding protein). Nuclear localization is well established experimentally and by phylogenetic inference.
Reason: Nuclear localization is a conserved, experimentally corroborated feature of galectin-3.
Supporting Evidence:
PMID:12070075
galectin-3 was identified as a component of a nuclear and cytoplasmic complex, the survival of motor neuron complex, through its interaction with Gemin4.
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GO:0005737
cytoplasm
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Galectin-3 is predominantly cytoplasmic in many cell types, with roles in endomembrane-damage sensing and anti-apoptotic signaling. Cytoplasmic localization is well supported.
Reason: Cytoplasmic localization is conserved and experimentally corroborated.
Supporting Evidence:
PMID:12070075
Shuttling of galectin-3 between the nucleus and cytoplasm.
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|
GO:0050918
positive chemotaxis
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 acts as a chemoattractant for monocytes/macrophages, a downstream immune-modulatory consequence of its extracellular lectin activity. Real but pleiotropic.
Reason: Phylogenetically inferred chemoattractant role corroborated experimentally (PMID:10925302), but a downstream process rather than the core molecular function.
Supporting Evidence:
PMID:10925302
Human galectin-3 is a novel chemoattractant for monocytes and macrophages.
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|
GO:0001772
immunological synapse
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 localizes to the immunological synapse where it negatively regulates TCR signaling. A specialized site of action, downstream of the lattice function.
Reason: Specialized cell-type-specific site of action; supported but not core to the gene's general function.
Supporting Evidence:
PMID:19706535
Galectin-3 was recruited to the cytoplasmic side of the immunological synapse (IS) in activated T cells.
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GO:0002548
monocyte chemotaxis
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Monocyte chemotaxis is a documented downstream immune activity (PMID:10925302). Pleiotropic, not core.
Reason: Real but downstream immune process; redundant with the experimental IDA annotation.
Supporting Evidence:
PMID:10925302
galectin-3 induced human monocyte migration in vitro in a dose-dependent manner, and it was chemotactic at high concentrations (1.0 microM) but chemokinetic at low concentrations (10-100 nM).
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GO:0019863
IgE binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Galectin-3 was originally identified and named as the "IgE-binding protein"; IgE binding is the historical defining activity and a specific glycan-mediated manifestation of the core carbohydrate-binding function. Accepted as core, consistent with the IDA IgE-binding annotation and the accepted disaccharide-binding (GO:0048030) core function.
Reason: Historical defining activity ("IgE-binding protein"); a specific manifestation of the core CRD glycan-binding function, kept consistent with the IDA annotation.
Supporting Evidence:
PMID:8347574
IgE-binding protein (epsilon BP) was originally identified in rat basophilic leukemia (RBL) cells by virtue of its affinity for IgE.
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GO:0030593
neutrophil chemotaxis
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 promotes neutrophil chemotaxis/adhesion in inflammation. Downstream immune role.
Reason: Pleiotropic downstream immune process.
Supporting Evidence:
PMID:11823514
Role of galectin-3 as an adhesion molecule for neutrophil extravasation during streptococcal pneumonia.
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GO:0043236
laminin binding
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 binds laminin (a heavily glycosylated ECM glycoprotein) via its CRD; historically named laminin-binding protein. A specific glycan-dependent binding event.
Reason: A specific glycoprotein-binding facet of the core lectin function.
Supporting Evidence:
PMID:2332426
The major non-integrin laminin binding protein of macrophages is identical to carbohydrate binding protein 35 (Mac-2).
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|
GO:0045806
negative regulation of endocytosis
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 lattices retain glycoproteins at the cell surface and reduce their endocytosis (e.g. at the immunological synapse, PMID:19706535). Downstream consequence of lattice formation.
Reason: Downstream regulatory effect of surface-lattice formation; not a core function.
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GO:0048245
eosinophil chemotaxis
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IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 promotes eosinophil chemotaxis in allergic inflammation. Downstream immune role.
Reason: Pleiotropic downstream immune process.
Supporting Evidence:
PMID:23576987
allergen-challenged mice deficient in Gal-3 (Gal-3(-/-)) exhibit decreased airway recruitment of eosinophils (Eos)
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|
GO:0048246
macrophage chemotaxis
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 chemoattracts macrophages (PMID:10925302). Downstream immune role.
Reason: Pleiotropic downstream immune process; redundant with experimental IDA.
Supporting Evidence:
PMID:10925302
Human galectin-3 is a novel chemoattractant for monocytes and macrophages.
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|
GO:0090280
positive regulation of calcium ion import
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 triggers a Ca2+ influx in monocytes at high concentrations (PMID:10925302), a signaling consequence of receptor cross-linking. Downstream effect.
Reason: Downstream signaling consequence of lattice/receptor cross-linking; not core.
Supporting Evidence:
PMID:10925302
Galectin-3 caused a Ca2+ influx in monocytes at high, but not low, concentrations, and both lactose and PTX inhibited this response.
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|
GO:2001237
negative regulation of extrinsic apoptotic signaling pathway
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Galectin-3 has anti-apoptotic activity (Bcl-2-like, NWGR motif; PMID:8692888, PMID:22761016). A pleiotropic, context-dependent process.
Reason: Real but pleiotropic apoptosis-regulatory role; not the core molecular function.
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GO:0005576
extracellular region
|
IEA
GO_REF:0000044 |
KEEP AS NON CORE |
Summary: Galectin-3 is secreted via a non-classical route and is abundant extracellularly. Localization is correct but downstream of intracellular biology.
Reason: Correct secreted localization (SubCell mapping), pleiotropic extracellular site.
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|
GO:0005634
nucleus
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Nuclear localization, consistent with the experimental IDA and IBA annotations.
Reason: Correct nuclear localization corroborated by multiple experimental annotations.
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|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Cytoplasmic localization, consistent with experimental IDA/IBA annotations.
Reason: Correct cytoplasmic localization corroborated by multiple experimental annotations.
|
|
GO:0007165
signal transduction
|
IEA
GO_REF:0000108 |
MARK AS OVER ANNOTATED |
Summary: This is an extremely general term auto-inferred from the receptor-ligand-activity annotation. It conveys little about galectin-3's actual function and is far less informative than the specific immune-modulatory and lectin activities.
Reason: Uninformative high-level BP term derived by inter-ontology inference; better captured by specific processes.
|
|
GO:0030246
carbohydrate binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Carbohydrate binding is the core molecular function of galectin-3. The IEA annotation is fully consistent with extensive experimental and structural data.
Reason: Correct core molecular function; redundant with experimental EXP/TAS annotations.
|
|
GO:0042129
regulation of T cell proliferation
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA-predicted; galectin-3 does modulate T-cell growth (PMID:8692888). Real but pleiotropic and also captured by the experimental IMP annotation.
Reason: Pleiotropic immune process; redundant with experimental annotation.
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|
GO:0046636
negative regulation of alpha-beta T cell activation
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA-predicted; consistent with negative regulation of TCR signaling at the synapse (PMID:19706535). Pleiotropic immune process.
Reason: Pleiotropic downstream immune regulation; supported but not core.
|
|
GO:0048018
receptor ligand activity
|
IEA
GO_REF:0000117 |
MARK AS OVER ANNOTATED |
Summary: ARBA-predicted generic receptor ligand activity. For galectin-3 the experimentally supported activity is specifically an inhibitory ligand of NKp30 (GO:0141069, IDA); generic receptor ligand activity is less precise and partly conflicts with the inhibitory role.
Reason: Less precise than the experimentally supported receptor ligand inhibitor activity; generic prediction.
|
|
GO:0070232
regulation of T cell apoptotic process
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA-predicted; consistent with the experimental IDA annotation (PMID:8692888). Pleiotropic immune process.
Reason: Pleiotropic immune process; redundant with experimental annotation.
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|
GO:0071677
positive regulation of mononuclear cell migration
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA-predicted; consistent with the experimental chemotaxis annotation (PMID:10925302). Downstream immune process.
Reason: Pleiotropic downstream immune process; redundant with experimental annotation.
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|
GO:0005515
protein binding
|
IPI
PMID:19706535 Galectin-3 negatively regulates TCR-mediated CD4+ T-cell act... |
MARK AS OVER ANNOTATED |
Summary: A generic protein-binding (IPI) record recording a physical interaction from PMID:19706535. Generic protein binding is uninformative per curation guidelines and conveys no specific functional information about galectin-3. The informative molecular function is its carbohydrate/galactoside binding, with most partner contacts being glycan-mediated; this generic protein-binding term does not capture an annotated function and the specific physical-interaction details are better recorded elsewhere.
Reason: Generic protein binding conveys no specific functional information; the informative MF is carbohydrate binding.
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|
GO:0005515
protein binding
|
IPI
PMID:20812334 Matrilysin-1 (MMP7) cleaves galectin-3 and inhibits wound he... |
MARK AS OVER ANNOTATED |
Summary: Interaction with MMP7 (which cleaves galectin-3). Generic protein binding is uninformative.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005515
protein binding
|
IPI
PMID:21712812 A novel strategy for evasion of NK cell immunity by tumours ... |
MARK AS OVER ANNOTATED |
Summary: Interaction with MICA in the context of NK-cell evasion. Generic protein binding is uninformative.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005515
protein binding
|
IPI
PMID:2402511 Molecular cloning of a human macrophage lectin specific for ... |
MARK AS OVER ANNOTATED |
Summary: From the original cloning paper (here the AHSG/fetuin-A interaction). Generic protein binding is uninformative; the paper's value is establishing the galactose-specific lectin identity.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005515
protein binding
|
IPI
PMID:24945728 Modulation of CD6 function through interaction with Galectin... |
MARK AS OVER ANNOTATED |
Summary: Interaction with CD6 (PMID:24945728). Generic protein binding is uninformative.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005515
protein binding
|
IPI
PMID:25315772 Tumor-released Galectin-3, a soluble inhibitory ligand of hu... |
MARK AS OVER ANNOTATED |
Summary: Interaction with NKp30/NCR3 as a soluble inhibitory ligand. The informative MF is receptor ligand inhibitor activity (GO:0141069), not generic protein binding.
Reason: Generic protein binding; better captured by receptor ligand inhibitor activity.
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|
GO:0005515
protein binding
|
IPI
PMID:25416956 A proteome-scale map of the human interactome network. |
MARK AS OVER ANNOTATED |
Summary: High-throughput interactome screen. Generic protein binding is uninformative.
Reason: Generic protein binding from a high-throughput screen; not informative.
|
|
GO:0005515
protein binding
|
IPI
PMID:28514442 Architecture of the human interactome defines protein commun... |
MARK AS OVER ANNOTATED |
Summary: High-throughput interactome screen. Generic protein binding is uninformative.
Reason: Generic protein binding from a high-throughput screen; not informative.
|
|
GO:0005515
protein binding
|
IPI
PMID:29427412 Galectin-3 Interacts with the CHI3L1 Axis and Contributes to... |
MARK AS OVER ANNOTATED |
Summary: Interaction with the CHI3L1/IL13RA2 axis. Generic protein binding is uninformative.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005515
protein binding
|
IPI
PMID:31515488 Extensive disruption of protein interactions by genetic vari... |
MARK AS OVER ANNOTATED |
Summary: Interaction-disruption-by-variant screen. Generic protein binding is uninformative.
Reason: Generic protein binding from a high-throughput screen; not informative.
|
|
GO:0005515
protein binding
|
IPI
PMID:31540324 Endoglin Protein Interactome Profiling Identifies TRIM21 and... |
MARK AS OVER ANNOTATED |
Summary: Interaction with endoglin (ENG). Generic protein binding is uninformative.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005515
protein binding
|
IPI
PMID:32296183 A reference map of the human binary protein interactome. |
MARK AS OVER ANNOTATED |
Summary: High-throughput binary interactome screen. Generic protein binding is uninformative.
Reason: Generic protein binding from a high-throughput screen; not informative.
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GO:0005515
protein binding
|
IPI
PMID:32915505 Structural Characterization of N-Linked Glycans in the Recep... |
MARK AS OVER ANNOTATED |
Summary: Interaction with SARS-CoV-2 spike glycoprotein, a glycan-mediated lectin contact. Generic protein binding is uninformative; the activity is carbohydrate (glycan) binding.
Reason: Generic protein binding; the underlying activity is glycan recognition.
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|
GO:0005515
protein binding
|
IPI
PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... |
MARK AS OVER ANNOTATED |
Summary: High-throughput interactome screen. Generic protein binding is uninformative.
Reason: Generic protein binding from a high-throughput screen; not informative.
|
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GO:0005515
protein binding
|
IPI
PMID:40205054 Multimodal cell maps as a foundation for structural and func... |
MARK AS OVER ANNOTATED |
Summary: High-throughput cell-map interactome study (ALCAM interaction). Generic protein binding is uninformative.
Reason: Generic protein binding from a high-throughput screen; not informative.
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GO:0005654
nucleoplasm
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence places galectin-3 in the nucleoplasm, consistent with its established nuclear localization.
Reason: Specific, experimentally supported nuclear sub-localization.
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GO:0005829
cytosol
|
IDA
GO_REF:0000052 |
ACCEPT |
Summary: HPA immunofluorescence places galectin-3 in the cytosol, consistent with its established cytoplasmic localization.
Reason: Specific, experimentally supported cytosolic localization.
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GO:0005576
extracellular region
|
EXP
PMID:32272059 A Translocation Pathway for Vesicle-Mediated Unconventional ... |
KEEP AS NON CORE |
Summary: Galectin-3 is secreted via the TMED10-facilitated non-classical pathway into the extracellular region. Experimentally supported but downstream localization.
Reason: Correct secreted localization; pleiotropic extracellular site of action.
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GO:0005737
cytoplasm
|
EXP
PMID:32272059 A Translocation Pathway for Vesicle-Mediated Unconventional ... |
ACCEPT |
Summary: Cytoplasmic pool of galectin-3 is the substrate for non-classical secretion via TMED10 (PMID:32272059). Consistent with established cytoplasmic localization.
Reason: Experimentally supported cytoplasmic localization.
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GO:0004864
protein phosphatase inhibitor activity
|
IDA
PMID:24846175 β1,6 GlcNAc branches-modified PTPRT attenuates its activity ... |
MARK AS OVER ANNOTATED |
Summary: In PMID:24846175 galectin-3 binds branched N-glycans on the phosphatase PTPRT and promotes its dimerization, which indirectly reduces PTPRT catalytic activity. This is a glycan-lattice effect on receptor clustering, not a direct allosteric/competitive phosphatase-inhibitor molecular function.
Reason: The effect on phosphatase activity is indirect (via glycan-mediated dimerization), not a direct enzyme-inhibitor molecular function.
Supporting Evidence:
PMID:24846175
GnT-V overexpression enhances galectin-3's cell-surface retention and promotes PTPRT's dimerization mediated by galectin-3. Increased dimerization subsequently reduces PTPRT's catalytic activity
|
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GO:0005576
extracellular region
|
IDA
PMID:26582946 Group 2 Innate Lymphoid Cells Express Functional NKp30 Recep... |
KEEP AS NON CORE |
Summary: Secreted galectin-3 acts extracellularly as an inhibitory ligand of NKp30 on ILC2 (PMID:26582946). Experimentally supported extracellular site of action.
Reason: Correct extracellular site of action; pleiotropic immune context.
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GO:0051134
negative regulation of NK T cell activation
|
IDA
PMID:26582946 Group 2 Innate Lymphoid Cells Express Functional NKp30 Recep... |
KEEP AS NON CORE |
Summary: Galectin-3 blocks NKp30-B7-H6 activation (PMID:26582946), inhibiting NK/ILC2 activation. Downstream immune-modulatory process.
Reason: Real but pleiotropic downstream immune process.
Supporting Evidence:
PMID:26582946
This interaction can be blocked by NKp30 blocking Ab and an inhibitory ligand, galectin-3.
|
|
GO:0141069
receptor ligand inhibitor activity
|
IDA
PMID:26582946 Group 2 Innate Lymphoid Cells Express Functional NKp30 Recep... |
ACCEPT |
Summary: Galectin-3 acts as a soluble inhibitory ligand of the NKp30 (NCR3) receptor, blocking its activation by B7-H6 (PMID:26582946, PMID:25315772). This is a specific, experimentally supported molecular function.
Reason: Specific, experimentally supported molecular function (inhibitory NKp30 ligand).
Supporting Evidence:
PMID:26582946
This interaction can be blocked by NKp30 blocking Ab and an inhibitory ligand, galectin-3.
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|
GO:0030246
carbohydrate binding
|
EXP
PMID:28973299 Novel polysaccharide binding to the N-terminal tail of galec... |
ACCEPT |
Summary: NMR mapping (PMID:28973299) demonstrates carbohydrate binding at two CRD sites and a novel N-terminal-tail site. This is the core molecular function of galectin-3.
Reason: Direct experimental evidence for the core carbohydrate-binding molecular function.
Supporting Evidence:
PMID:28973299
epitopes for binding to three sites on 15N-labeled Gal-3, two within its carbohydrate recognition domain (CRD) and one at a novel site within the NT
|
|
GO:0140693
molecular condensate scaffold activity
|
IDA
PMID:28893908 The intrinsically disordered N-terminal domain of galectin-3... |
ACCEPT |
Summary: The disordered N-terminal domain drives multisite self-association and liquid-liquid phase separation (PMID:28893908), the molecular basis of galectin-3's multivalency and lattice/condensate formation. A core, distinctive molecular function.
Reason: Experimentally supported; underpins galectin-3's distinctive lattice/condensate behavior.
Supporting Evidence:
PMID:28893908
galectin-3 can also undergo liquid-liquid phase separation
|
|
GO:0140693
molecular condensate scaffold activity
|
IDA
PMID:32144274 Liquid-liquid phase separation and extracellular multivalent... |
ACCEPT |
Summary: Galectin-3's N-terminal domain undergoes LLPS and bridges/aggregates glycosylated molecules (PMID:32144274), explaining its extracellular agglutination function. Supports the condensate-scaffold/lattice activity.
Reason: Experimentally supported condensate-scaffold/lattice activity.
Supporting Evidence:
PMID:32144274
its N-terminal domain (NTD) undergoes LLPS driven by interactions between its aromatic residues
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GO:0031334
positive regulation of protein-containing complex assembly
|
IDA
PMID:24846175 β1,6 GlcNAc branches-modified PTPRT attenuates its activity ... |
KEEP AS NON CORE |
Summary: Galectin-3 promotes glycan-dependent dimerization of PTPRT (PMID:24846175), an instance of promoting receptor complex assembly via lattice formation. A downstream consequence of the lattice function.
Reason: Downstream consequence of glycan-lattice formation; not a core function in itself.
Supporting Evidence:
PMID:24846175
promotes PTPRT's dimerization mediated by galectin-3
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GO:0031012
extracellular matrix
|
HDA
PMID:28327460 Comprehensive proteomic characterization of stem cell-derive... |
KEEP AS NON CORE |
Summary: High-throughput proteomic detection of galectin-3 in stem-cell-derived ECM. Localization-by-detection, consistent with secretion.
Reason: Proteomics colocalization; consistent with secreted galectin-3 but not a functional or core annotation.
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GO:0019903
protein phosphatase binding
|
IPI
PMID:24846175 β1,6 GlcNAc branches-modified PTPRT attenuates its activity ... |
KEEP AS NON CORE |
Summary: Galectin-3 binds the phosphatase PTPRT (PMID:24846175). This is a glycan-mediated contact; more informatively captured by carbohydrate binding, but a specific documented partner.
Reason: Specific documented interaction; glycan-mediated and downstream of lectin activity.
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GO:1903078
positive regulation of protein localization to plasma membrane
|
IDA
PMID:24846175 β1,6 GlcNAc branches-modified PTPRT attenuates its activity ... |
KEEP AS NON CORE |
Summary: Galectin-3 lattices retain glycoproteins (e.g. PTPRT) at the cell surface, prolonging plasma-membrane residence (PMID:24846175). Downstream consequence of lattice formation.
Reason: Downstream consequence of surface-lattice formation; not a core function.
Supporting Evidence:
PMID:24846175
addition of β1,6 GlcNAc branches on PTPRT prolongs PTPRT's cell-surface retention time
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GO:0009986
cell surface
|
ISS
GO_REF:0000024 |
KEEP AS NON CORE |
Summary: Galectin-3 associates with the cell surface after non-classical secretion, where it forms glycan lattices. Cell-surface localization is consistent with its extracellular lattice function.
Reason: Correct extracellular/cell-surface site of action; pleiotropic.
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GO:0031012
extracellular matrix
|
HDA
PMID:28675934 Characterization of the Extracellular Matrix of Normal and D... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in tissue ECM. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
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GO:0031012
extracellular matrix
|
HDA
PMID:25037231 Extracellular matrix signatures of human primary metastatic ... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in colon cancer ECM. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
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GO:0005576
extracellular region
|
HDA
PMID:27068509 Extracellular matrix remodelling in response to venous hyper... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in varicose-vein ECM. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
|
|
GO:0031012
extracellular matrix
|
HDA
PMID:27559042 Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin... |
KEEP AS NON CORE |
Summary: Glycoproteomic detection of galectin-3 in atrial-fibrillation tissue ECM. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
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GO:0031012
extracellular matrix
|
HDA
PMID:20551380 Proteomics characterization of extracellular space component... |
KEEP AS NON CORE |
Summary: Proteomic characterization of aortic extracellular space detected galectin-3. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
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GO:0030667
secretory granule membrane
|
TAS
Reactome:R-HSA-6798743 |
KEEP AS NON CORE |
Summary: Reactome places galectin-3 at the secretory (specific) granule membrane in the context of neutrophil degranulation. Consistent with packaging for secretion in neutrophils; specialized cell-type context.
Reason: Cell-type-specific granule localization from pathway annotation; not core.
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|
GO:0101003
ficolin-1-rich granule membrane
|
TAS
Reactome:R-HSA-6800426 |
KEEP AS NON CORE |
Summary: Reactome places galectin-3 at the ficolin-1-rich granule membrane in neutrophil degranulation. Specialized cell-type context.
Reason: Cell-type-specific granule localization from pathway annotation; not core.
|
|
GO:2001200
positive regulation of dendritic cell differentiation
|
IDA
NOT
PMID:16116184 Galectin-9 induces maturation of human monocyte-derived dend... |
ACCEPT |
Summary: This is a NOT annotation. PMID:16116184 shows galectin-9 (not galectin-3) induces dendritic-cell maturation; galectin-3 lacks this activity. The negated annotation correctly records the absence of this function for galectin-3.
Reason: Correctly recorded negative (NOT) annotation distinguishing galectin-3 from galectin-9.
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:23533145 In-depth proteomic analyses of exosomes isolated from expres... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in urinary/prostatic-secretion exosomes. Localization-by-detection, consistent with secretion.
Reason: Proteomics localization; consistent with secretion but not core or functional.
|
|
GO:0016020
membrane
|
HDA
PMID:19946888 Defining the membrane proteome of NK cells. |
MARK AS OVER ANNOTATED |
Summary: NK-cell membrane proteome detection. Very general localization-by-detection term.
Reason: Extremely general localization from a proteomics screen; uninformative.
|
|
GO:0005634
nucleus
|
IDA
PMID:7682704 Decreased expression of Mac-2 (carbohydrate binding protein ... |
ACCEPT |
Summary: Direct experimental evidence of nuclear localization of galectin-3 (Mac-2/CBP35) in colonic epithelium (PMID:7682704). Core localization.
Reason: Direct experimental evidence for nuclear localization.
|
|
GO:0050860
negative regulation of T cell receptor signaling pathway
|
ISS
PMID:19706535 Galectin-3 negatively regulates TCR-mediated CD4+ T-cell act... |
KEEP AS NON CORE |
Summary: Transferred from mouse ortholog (P16110); galectin-3 negatively regulates TCR signaling at the synapse. Pleiotropic downstream immune regulation.
Reason: Pleiotropic downstream immune-regulatory process (ortholog transfer).
|
|
GO:2000521
negative regulation of immunological synapse formation
|
ISS
PMID:19706535 Galectin-3 negatively regulates TCR-mediated CD4+ T-cell act... |
KEEP AS NON CORE |
Summary: Transferred from mouse ortholog; galectin-3 limits TCR clustering at the synapse. Pleiotropic downstream immune process.
Reason: Pleiotropic downstream immune process (ortholog transfer).
|
|
GO:2001189
negative regulation of T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell
|
ISS
PMID:19706535 Galectin-3 negatively regulates TCR-mediated CD4+ T-cell act... |
KEEP AS NON CORE |
Summary: Transferred from mouse ortholog; a highly specific child term of the negative TCR regulation role. Pleiotropic downstream immune process.
Reason: Pleiotropic, highly specific downstream immune process (ortholog transfer).
|
|
GO:0042129
regulation of T cell proliferation
|
IMP
PMID:8692888 Expression of galectin-3 modulates T-cell growth and apoptos... |
KEEP AS NON CORE |
Summary: Galectin-3 overexpression increases T-cell growth rates (PMID:8692888), an experimentally supported but pleiotropic immune process.
Reason: Pleiotropic immune process supported by experimental evidence.
Supporting Evidence:
PMID:8692888
Transfectants expressing galectin-3 displayed higher growth rates than control transfectants
|
|
GO:0005737
cytoplasm
|
IDA
PMID:9447709 Detection and distribution of the carbohydrate binding prote... |
ACCEPT |
Summary: Direct detection of cytoplasmic galectin-3 in notochord/intervertebral disc tissue (PMID:9447709). Core localization.
Reason: Direct experimental evidence for cytoplasmic localization.
|
|
GO:0001772
immunological synapse
|
IDA
PMID:19706535 Galectin-3 negatively regulates TCR-mediated CD4+ T-cell act... |
KEEP AS NON CORE |
Summary: Galectin-3 localizes to the immunological synapse where it down-regulates TCR signaling (PMID:19706535). Specialized site of action.
Reason: Specialized cell-type-specific site of action; not core.
|
|
GO:0002548
monocyte chemotaxis
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 chemoattracts monocytes (PMID:10925302), blocked by lactose and a CRD fragment, via a PTX-sensitive pathway. Downstream immune process.
Reason: Real but pleiotropic downstream immune process.
Supporting Evidence:
PMID:10925302
galectin-3 is a novel chemoattractant for monocytes and macrophages
|
|
GO:0005634
nucleus
|
IDA
PMID:22761016 Downregulation of galectin-3 by EGF mediates the apoptosis o... |
ACCEPT |
Summary: Galectin-3 detected in the nucleus (PMID:22761016). Consistent with established nuclear localization.
Reason: Experimentally supported nuclear localization.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:22761016 Downregulation of galectin-3 by EGF mediates the apoptosis o... |
ACCEPT |
Summary: Cytoplasmic galectin-3 mediates anti-apoptotic activity; EGF suppresses cytoplasmic galectin-3 to permit apoptosis (PMID:22761016). Consistent with cytoplasmic localization.
Reason: Experimentally supported cytoplasmic localization.
Supporting Evidence:
PMID:22761016
High concentrations of EGF suppressed cytoplasmic expression of galectin-3
|
|
GO:0019863
IgE binding
|
IDA
PMID:2261464 Human IgE-binding protein: a soluble lectin exhibiting a hig... |
ACCEPT |
Summary: Galectin-3 was originally identified and named as the "IgE-binding protein," so IgE binding is the historical defining activity of this gene product. It is a direct manifestation of the CRD's beta-galactoside / glycan-binding activity (the core molecular function), recognizing IgE glycoforms via its lectin domain. Because it is a specific, directly demonstrated (IDA) instance of the core carbohydrate-binding activity, it is accepted as core, consistent with the IBA disaccharide-binding (GO:0048030) annotation being accepted as core.
Reason: Historical defining activity of galectin-3 ("IgE-binding protein"); a specific, experimentally demonstrated manifestation of the core CRD glycan-binding function, consistent with treating the underlying beta-galactoside/glycan recognition as core.
|
|
GO:0030593
neutrophil chemotaxis
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 promotes neutrophil chemotaxis (PMID:10925302). Downstream immune process.
Reason: Real but pleiotropic downstream immune process.
|
|
GO:0042056
chemoattractant activity
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 functions as a chemoattractant for monocytes/macrophages (PMID:10925302). This is an experimentally supported molecular function, mediated by its lectin/lattice activity at the cell surface. Real but a specialized immune-context activity.
Reason: Experimentally supported but specialized immune-context molecular function, downstream of the core lectin activity.
Supporting Evidence:
PMID:10925302
galectin-3 induced human monocyte migration in vitro in a dose-dependent manner
|
|
GO:0045806
negative regulation of endocytosis
|
IDA
PMID:19706535 Galectin-3 negatively regulates TCR-mediated CD4+ T-cell act... |
KEEP AS NON CORE |
Summary: Galectin-3 lattices reduce receptor endocytosis at the immunological synapse (PMID:19706535). Downstream consequence of surface-lattice formation.
Reason: Downstream consequence of lattice formation; not core.
|
|
GO:0048245
eosinophil chemotaxis
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 promotes eosinophil chemotaxis (PMID:10925302). Downstream immune process.
Reason: Real but pleiotropic downstream immune process.
|
|
GO:0048246
macrophage chemotaxis
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 chemoattracts macrophages (PMID:10925302). Downstream immune process.
Reason: Real but pleiotropic downstream immune process.
Supporting Evidence:
PMID:10925302
Cultured human macrophages and alveolar macrophages also migrated toward galectin-3
|
|
GO:0050918
positive chemotaxis
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 drives positive chemotaxis of myeloid cells (PMID:10925302). Downstream immune process; redundant parent of the specific chemotaxis terms.
Reason: Pleiotropic downstream immune process.
|
|
GO:0070232
regulation of T cell apoptotic process
|
IDA
PMID:8692888 Expression of galectin-3 modulates T-cell growth and apoptos... |
KEEP AS NON CORE |
Summary: Galectin-3 expression confers resistance to apoptosis in T cells (PMID:8692888). Pleiotropic immune/apoptosis process.
Reason: Pleiotropic downstream immune/apoptosis process.
Supporting Evidence:
PMID:8692888
galectin-3 expression in these cells confers resistance to apoptosis induced by anti-Fas antibody and staurosporine
|
|
GO:0071674
mononuclear cell migration
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 induces mononuclear cell (monocyte) migration (PMID:10925302). Downstream immune process.
Reason: Pleiotropic downstream immune process.
|
|
GO:0071677
positive regulation of mononuclear cell migration
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 positively regulates mononuclear cell migration (PMID:10925302). Downstream immune process.
Reason: Pleiotropic downstream immune process.
|
|
GO:0090280
positive regulation of calcium ion import
|
IDA
PMID:10925302 Human galectin-3 is a novel chemoattractant for monocytes an... |
KEEP AS NON CORE |
Summary: Galectin-3 induces Ca2+ influx in monocytes at high concentrations (PMID:10925302). Downstream signaling consequence of receptor cross-linking.
Reason: Downstream signaling consequence; not core.
Supporting Evidence:
PMID:10925302
Galectin-3 caused a Ca2+ influx in monocytes at high, but not low, concentrations
|
|
GO:1902041
regulation of extrinsic apoptotic signaling pathway via death domain receptors
|
IMP
PMID:8692888 Expression of galectin-3 modulates T-cell growth and apoptos... |
KEEP AS NON CORE |
Summary: Galectin-3 confers resistance to Fas (death-receptor)-induced apoptosis in T cells (PMID:8692888). Pleiotropic apoptosis-regulatory process.
Reason: Pleiotropic downstream apoptosis-regulatory process.
Supporting Evidence:
PMID:8692888
confers resistance to apoptosis induced by anti-Fas antibody and staurosporine
|
|
GO:2001237
negative regulation of extrinsic apoptotic signaling pathway
|
IDA
PMID:22761016 Downregulation of galectin-3 by EGF mediates the apoptosis o... |
KEEP AS NON CORE |
Summary: Cytoplasmic galectin-3 has anti-apoptotic activity; its downregulation by EGF permits apoptosis (PMID:22761016). Pleiotropic apoptosis-regulatory process.
Reason: Pleiotropic downstream apoptosis-regulatory process.
Supporting Evidence:
PMID:22761016
overexpression of galectin-3 could reduce EGF-induced apoptosis in HepG2 cells
|
|
GO:0003723
RNA binding
|
HDA
PMID:22658674 Insights into RNA biology from an atlas of mammalian mRNA-bi... |
KEEP AS NON CORE |
Summary: Galectin-3 was captured in a high-throughput mRNA-interactome screen (PMID:22658674) and has a proposed nuclear pre-mRNA splicing role. RNA binding is plausible but rests on a proteome-wide capture rather than a dedicated functional assay.
Reason: Plausible nuclear RNA-associated role from a high-throughput screen; not a core, directly demonstrated molecular function.
|
|
GO:0043236
laminin binding
|
IDA
PMID:2402511 Molecular cloning of a human macrophage lectin specific for ... |
KEEP AS NON CORE |
Summary: Galectin-3 binds laminin (PMID:2402511); historically named laminin-binding protein. A specific glycoprotein-binding facet of the core lectin function.
Reason: Specific glycoprotein-binding facet of the core lectin function.
|
|
GO:0030855
epithelial cell differentiation
|
IEP
PMID:21492153 Analysis of proteomic changes induced upon cellular differen... |
KEEP AS NON CORE |
Summary: Galectin-3 expression changes during Caco-2 enterocyte differentiation (PMID:21492153), an IEP (expression-pattern) correlation rather than a direct functional assay. Pleiotropic, correlative.
Reason: Correlative expression-pattern (IEP) evidence; pleiotropic developmental process.
|
|
GO:0005576
extracellular region
|
HDA
PMID:22664934 Comparison of tear protein levels in breast cancer patients ... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in tears. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
|
|
GO:0005576
extracellular region
|
HDA
PMID:23580065 Shotgun proteomics reveals specific modulated protein patter... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in tears (glaucoma study). Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:19199708 Proteomic analysis of human parotid gland exosomes by multid... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in parotid-gland exosomes. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
|
|
GO:0070062
extracellular exosome
|
HDA
PMID:19056867 Large-scale proteomics and phosphoproteomics of urinary exos... |
KEEP AS NON CORE |
Summary: Proteomic detection of galectin-3 in urinary exosomes. Localization-by-detection.
Reason: Proteomics localization consistent with secretion; not core.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6798743 |
KEEP AS NON CORE |
Summary: Reactome places galectin-3 at the plasma membrane in the neutrophil-degranulation pathway. Consistent with cell-surface association after secretion.
Reason: Cell-surface association from pathway annotation; not core.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-6800426 |
KEEP AS NON CORE |
Summary: Reactome plasma-membrane annotation (ficolin-rich granule pathway). Consistent with cell-surface association.
Reason: Cell-surface association from pathway annotation; not core.
|
|
GO:0005886
plasma membrane
|
TAS
Reactome:R-HSA-8938382 |
KEEP AS NON CORE |
Summary: Reactome plasma-membrane annotation (RUNX-regulated expression pathway). Consistent with cell-surface association after secretion.
Reason: Cell-surface association from pathway annotation; not core.
|
|
GO:0005515
protein binding
|
IPI
PMID:19016746 Identification of mitochondrial F(1)F(0)-ATP synthase intera... |
MARK AS OVER ANNOTATED |
Summary: Interaction with mitochondrial F1F0-ATP synthase in colon cancer cells. Generic protein binding is uninformative.
Reason: Generic protein binding; not an informative molecular function.
|
|
GO:0005743
mitochondrial inner membrane
|
IDA
PMID:19016746 Identification of mitochondrial F(1)F(0)-ATP synthase intera... |
KEEP AS NON CORE |
Summary: A single study (PMID:19016746) reports galectin-3 at the mitochondrial inner membrane via interaction with F1F0-ATP synthase in colon cancer cells. This is an unusual, context-specific localization not corroborated by the broader literature (cytoplasm/nucleus/secreted), so it is treated as non-core.
Reason: Single-study, context-specific localization not corroborated by the broader literature; retained but non-core.
|
|
GO:0005634
nucleus
|
IDA
PMID:14961764 Nucling mediates apoptosis by inhibiting expression of galec... |
ACCEPT |
Summary: Galectin-3 detected in the nucleus (PMID:14961764). Consistent with established nuclear localization.
Reason: Experimentally supported nuclear localization.
|
|
GO:0005737
cytoplasm
|
IDA
PMID:14961764 Nucling mediates apoptosis by inhibiting expression of galec... |
ACCEPT |
Summary: Galectin-3 detected in the cytoplasm (PMID:14961764). Consistent with established cytoplasmic localization.
Reason: Experimentally supported cytoplasmic localization.
|
|
GO:0030246
carbohydrate binding
|
TAS
PMID:9162064 Strikingly different localization of galectin-3 and galectin... |
ACCEPT |
Summary: Carbohydrate binding, the core molecular function, asserted by a primary study (PMID:9162064). Redundant with the EXP/IEA carbohydrate-binding annotations.
Reason: Core molecular function; well supported.
|
|
GO:0005886
plasma membrane
|
TAS
PMID:9162064 Strikingly different localization of galectin-3 and galectin... |
KEEP AS NON CORE |
Summary: Galectin-3 associates with the plasma membrane / cell surface (PMID:9162064), consistent with its extracellular lattice function after secretion.
Reason: Cell-surface association; consistent with secreted lattice function but not core.
|
|
GO:0062093
lysophagy
|
IDA
PMID:32521192 MERIT, a cellular system coordinating lysosomal repair, remo... |
NEW |
Summary: Cytosolic galectin-3 detects lysosomal membrane rupture by binding luminal glycans newly exposed to the cytosol, recruits and organizes ESCRT components (PDCD6IP/ALIX, CHMP4A, CHMPB) for membrane repair, and at later stages cooperates with TRIM16 to engage the autophagy machinery (ATG16L1, ATG13, LC3) in selective autophagic removal of severely damaged lysosomes (PMID:32521192, PMID:27693506). This glycan-damage-sensing lysophagy role is among the strongest intracellular functions of galectin-3 and is not currently represented in GOA; it is added here as a NEW annotation. The same machinery also mediates galectin-3-dependent secretory autophagy of alpha-synuclein after vesicular damage (PMID:34612142).
Reason: Strongly supported intracellular function (damaged-endomembrane glycan sensing leading to ESCRT repair and TRIM16-dependent lysophagy) that is absent from the existing GOA annotations; added as a core glycan-sensing process.
Supporting Evidence:
PMID:32521192
LGALS3 (galectin 3) detects membrane damage by detecting exposed lumenal glycosyl groups, recruits and organizes ESCRT components PDCD6IP/ALIX, CHMP4A, and CHMPB at damaged sites on the lysosomes, and facilitates ESCRT-driven repair of lysosomal membrane. At later stages, LGALS3 cooperates with TRIM16, an autophagy receptor-regulator, to engage autophagy machinery in removal of excessively damaged lysosomes.
PMID:32521192
The capacity of LGALS3 to recognize glycans is required to initiate autophagy in response to lysosomal damage.
|
Q: Is the nuclear pre-mRNA splicing / RNA-binding role of galectin-3 a direct, sequence- or structure-specific RNA-binding activity, or an indirect association via glycosylated/RNP partners captured in proteome-wide screens?
Q: To what extent does liquid-liquid phase separation of the N-terminal domain operate intracellularly (e.g. in endomembrane-damage sensing) versus only in the extracellular agglutination context?
Experiment: Compare wild-type galectin-3 with a CRD point mutant (e.g. R186S, which abolishes beta-galactoside binding) for recruitment to ruptured lysosomes (induced by LLOMe or silica) and for co-recruitment of TRIM16/ATG16L1/BECN1, by live-cell imaging and co-IP.
Hypothesis: The carbohydrate-recognition activity of the CRD is required for galectin-3-mediated sensing of damaged endomembranes and recruitment of the autophagy machinery.
Type: structure-function / mutagenesis with damage-induced autophagy assay
Experiment: Compare full-length galectin-3 with N-terminal-tail deletion and aromatic-residue mutants (tryptophan/tyrosine substitutions that impair LLPS) for surface-receptor residence time (e.g. of GnT-V-modified receptors), lattice formation, and endocytosis rates.
Hypothesis: N-terminal-domain-driven self-association/LLPS is necessary for galectin-3 lattice formation and the consequent retention of branched-N-glycan receptors at the cell surface.
Type: domain-deletion / point-mutation with quantitative cell-surface imaging
=== UNIPROT METADATA ===
UniProt ID: P17931
Entry Name: LEG3_HUMAN
Gene Name: LGALS3
Protein Name: Galectin-3
Organism: Homo sapiens (Human)
NCBI Taxonomy ID: 9606
Function: Galactose-specific lectin which binds IgE. May mediate with the alpha-3, beta-1 integrin the stimulation by CSPG4 of endothelial cells migration. Together with DMBT1, required for terminal differentiation of columnar epithelial cells during early embryogenesis (By similarity). In the nucleus: acts as a pre-mRNA splicing factor. Involved in acute inflammatory responses including neutrophil activation and adhesion, chemoattraction of monocytes macrophages, opsonization of apoptotic neutrophils, and activation of mast cells. Together with TRIM16, coordinates the recognition of membrane damage with mobilization of the core autophagy regulators ATG16L1 and BECN1 in response to damaged endomembranes.
Subcellular Location: Cytoplasm
Subunit: Probably forms homo- or heterodimers. Interacts with DMBT1 (By similarity). Interacts with CD6 and ALCAM (PubMed:24945728). Forms a complex with the ITGA3, ITGB1 and CSPG4. Interacts with LGALS3BP, LYPD3, ZFTRAF1 and UACA. Interacts with TRIM16; this interaction mediates autophagy of damage endomembranes. Interacts with cargo receptor TMED10; the interaction mediates the translocation from the cytoplasm into the ERGIC (endoplasmic reticulum-Golgi intermediate compartment) and thereby secretion (PubMed:32272059).
======================
Prepare a comprehensive literature-backed research report for GO annotation review of the target gene.
Focus on:
Structure the report as:
Use citations for all substantive claims.
Gene Symbol: LGALS3
Organism: Homo sapiens
UniProt ID: P17931
Report Date: 2026
Galectin-3 (LGALS3) is a chimera-type β-galactoside-binding lectin with a conserved C-terminal carbohydrate recognition domain (CRD) and an intrinsically disordered N-terminal domain that enables oligomerization (radziejewska2023galectin3andepithelial pages 1-2, tan2021galectin3akey pages 1-2). The protein is encoded by the LGALS3 gene and exhibits pleiotropic functions across multiple cellular compartments. Recent literature from 2023-2025 strongly supports several core molecular functions and biological processes, while also highlighting areas where GO annotations risk overextension.
Core Biochemical Activity: LGALS3's primary molecular function is β-galactoside binding through its ~130 amino acid CRD, which recognizes N-acetyllactosamine structures on glycoproteins and glycolipids (radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2). This lectin activity underpins its ability to form multivalent glycan lattices at the cell surface and to sense exposed lumenal glycans on damaged intracellular organelles (jia2020meritacellular pages 1-4).
Best-Supported Cellular Functions: The most experimentally robust findings emphasize LGALS3's role in lysosomal damage response, where it detects membrane rupture, recruits ESCRT repair machinery, and coordinates with TRIM16 to mobilize autophagy factors for lysophagy (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2). Extracellularly, LGALS3 modulates receptor signaling and fibrosis through interactions with integrins and TGFβRII (calver2024definingthemechanism pages 1-2).
Annotation Risks: Several annotations warrant caution, including broad attributions to pyroptosis (shivcharan2025endolysosomaldamagesurveillance pages 1-3), direct synaptic remodeling (siew2024galectin3aggravatesmicroglial pages 1-2), and pathology-specific localizations like Lewy bodies (garciarevilla2023galectin3shapestoxic pages 1-2). Developmental roles and unconventional secretion mechanisms also require careful contextualization.
β-Galactoside Binding Lectin Activity:
LGALS3 is a β-galactoside-binding protein that recognizes glycan structures containing the N-acetyllactosamine disaccharide (Galβ1-4GlcNAc) on N- and O-glycans, glycolipids, and blood group antigens (radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2). The CRD is responsible for binding, with lactose representing the minimal carbohydrate ligand. Structural studies indicate that the 3-OH group of galactose is crucial for recognition, while substitutions at 4-OH and 6-OH attenuate binding (radziejewska2023galectin3andepithelial pages 1-2). This lectin activity is glycan-specific but heterogeneous, not exhibiting strict 1:1 stoichiometry in many interactions (calver2024definingthemechanism pages 1-2).
Oligomerization and Lattice Formation:
The N-terminal domain of LGALS3, rich in proline and glycine residues, mediates self-association and pentamerization upon engagement with multivalent ligands (radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2). This oligomerization capacity enables LGALS3 to cross-link cell-surface glycoconjugates into lattices that regulate receptor clustering, signaling, and internalization (mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2). Recent biophysical studies also demonstrate that LGALS3 can undergo liquid-liquid phase separation, which is critical for its mitochondrial quality-control functions (liu2025galectin3directsmitophagy pages 1-2).
Substrate Specificity:
LGALS3 binds preferentially to β-galactoside-containing structures. In disease contexts such as cancer, it recognizes tumor-associated carbohydrate antigens like the Thomsen-Friedenreich (T) antigen (Galβ1-3GalNAc) on MUC1 mucin (radziejewska2023galectin3andepithelial pages 1-2). In intracellular settings, it detects exposed lumenal glycans on damaged lysosomes and mitochondria, serving as a damage sensor (jia2020meritacellular pages 1-4, liu2025galectin3directsmitophagy pages 1-2).
| Molecular function | Specific activity/substrate | Evidence strength | Key citations | Notes on annotation |
|---|---|---|---|---|
| β-galactoside binding lectin activity | Binds β-galactoside-containing glycans; recognizes N-acetyllactosamine on N- and O-glycans, glycolipids, and some blood group antigens | Strong | (zaborska2023theroleof pages 1-3, radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2, tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2) | Core, canonical molecular function. Best candidate for central GO MF annotation. |
| Carbohydrate recognition domain (CRD)-dependent glycan binding | Conserved ~130 aa CRD mediates sugar binding; lactose described as minimal ligand, with 3-OH crucial and 4-OH/6-OH substitutions weakening binding | Strong | (zaborska2023theroleof pages 1-3, radziejewska2023galectin3andepithelial pages 1-2, tan2021galectin3akey pages 1-2) | Core function; more specific than broad “binding” language. Supports carbohydrate-dependent interactions in multiple contexts. |
| Glycan binding to exposed lumenal glycans on damaged organelles | Cytosolic LGALS3 detects β-galactoside-containing glycans exposed after lysosomal/endosomal membrane damage | Strong | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) | Strongly supported intracellular extension of core lectin function; suitable for damage-sensing/lysophagy-related annotation with care to context. |
| Glycoprotein/glycolipid lattice formation at cell surface | Pentameric or oligomeric Galectin-3 cross-links multivalent glycoconjugates to form lattices that regulate receptor organization/signaling/internalization | Strong | (mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2) | Core mechanistic consequence of lectin activity; useful for annotation notes, though “lattice formation” may not map cleanly to a single GO MF term. |
| Self-association / oligomerization | N-terminal intrinsically disordered/proline-glycine-rich region supports self-association and pentamerization upon multivalent ligand engagement | Strong | (radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2, tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2) | Important biochemical property underpinning extracellular signaling; generally a supporting annotation rather than sole core function. |
| Integrin binding (cell-surface glycoprotein interaction) | Binds αv integrins including αvβ1, αvβ5, αvβ6 in a glycosylation-dependent, heterogeneous interaction; validated for β1 integrin association in fibroblasts | Strong | (calver2024definingthemechanism pages 1-2) | Well supported in human cells; appropriate for protein binding annotations if evidence is tied to specific integrin complexes and extracellular context. |
| TGFβ receptor subunit binding | Binds TGFβRII in a glycosylation-dependent manner, promoting TGF-β1 signaling/activation in fibrotic context | Moderate to strong | (calver2024definingthemechanism pages 1-2) | Supported experimentally, but likely context-specific rather than universal/core function of LGALS3. |
| TRIM16 interaction / scaffold recruitment | Cooperates with TRIM16 at damaged lysosomes to organize autophagy machinery during lysophagy | Strong | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) | Strong for lysosomal damage response; should be annotated as context-dependent intracellular protein binding, not a universal primary function. |
| ATG16L1-associated autophagy machinery recruitment | LGALS3-TRIM16 axis recruits ATG16L1 to damaged lysosomes; also required for SNCA secretory autophagy pathway | Strong | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) | Best treated as process-specific mechanistic role in autophagy/lysophagy rather than general molecular function. |
| ULK1 recruitment via damaged-organelle scaffold | Recruits or helps localize ULK1-containing initiation machinery to damaged lysosomes or mitochondria during selective autophagy | Moderate to strong | (jia2020meritacellular pages 1-4, liu2025galectin3directsmitophagy pages 1-2) | Increasingly supported, especially in organelle quality-control contexts; likely context-dependent and should not be over-generalized. |
| TMED10 interaction in unconventional secretion | TMED10 mediates translocation/secretion of leaderless cargoes including galectin-3 via ERGIC-associated unconventional secretion pathway | Moderate | (zhang2020atranslocationpathway pages 1-4) | Evidence strongly supports TMED10 pathway in Gal-3 secretion, but direct stable LGALS3–TMED10 binding is more pathway-contextual than core biochemical function. |
| Protein-protein interaction with PHB2 during mitophagy | Upon mitochondrial outer membrane rupture, Galectin-3 interacts with IMM protein PHB2 and promotes ULK1 recruitment | Moderate | (liu2025galectin3directsmitophagy pages 1-2) | Emerging intracellular function in mitophagy; likely not a core species-wide annotation yet without broader corroboration. |
| Carbohydrate-independent peptide/protein interactions | N-terminal domain enables binding to peptide motifs/protein partners in addition to glycans | Moderate | (lozinski2024emergingroleof pages 1-2) | Useful annotation note: many LGALS3 functions are glycan-dependent, but not all interactions are strictly carbohydrate-mediated. Avoid reducing all biology to lectin binding alone. |
| No catalytic enzymatic activity established | Galectin-3 is a binding/scaffolding lectin without known catalytic activity | Strong | (garciarevilla2023galectin3shapestoxic pages 1-2) | Important negative annotation point: avoid enzyme activity terms unless future direct evidence appears. |
Table: This table summarizes the best-supported molecular functions and interaction activities of human Galectin-3/LGALS3, separating core lectin biochemistry from context-dependent binding and scaffolding roles. It is useful for GO review because it highlights which annotations are central versus potentially overextended.
Integrin Binding:
Surface plasmon resonance and coimmunoprecipitation studies confirm that LGALS3 binds αv integrins (αvβ1, αvβ5, αvβ6) and β1 integrin in a glycosylation-dependent manner (calver2024definingthemechanism pages 1-2). Proximity ligation assays show that LGALS3 and β1 integrin colocalize within ~40 nm on fibroblast surfaces, with this association increased by TGF-β1 treatment and blocked by galectin-3 inhibitors (calver2024definingthemechanism pages 1-2). This interaction is central to LGALS3's role in potentiating integrin-mediated TGF-β1 activation in fibrosis.
TGFβRII Binding:
LGALS3 also binds the TGFβRII subunit in a glycan-dependent manner, promoting TGF-β1 signaling in lung fibroblasts (calver2024definingthemechanism pages 1-2). Small-molecule inhibitors targeting the CRD block these interactions, confirming carbohydrate-mediated binding.
TRIM16-ATG16L1-ULK1 Autophagy Complex:
At damaged lysosomes, LGALS3 cooperates with TRIM16, an autophagy receptor-regulator, to recruit core autophagy machinery including ATG16L1, ULK1, and LC3-related proteins (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2). TRIM16 serves as a platform to engage early autophagy factors, and this LGALS3-TRIM16 axis is essential for lysophagy—the selective autophagic removal of damaged lysosomes (jia2020meritacellular pages 1-4).
ESCRT Recruitment:
LGALS3 recruits and organizes ESCRT components, particularly PDCD6IP/ALIX, CHMP4A, and CHMPB, to sites of lysosomal membrane damage for membrane repair (jia2020meritacellular pages 1-4). This function is independent of ESCRT-I components like TSG101 and represents a parallel ESCRT-III recruitment pathway.
TMED10-Mediated Unconventional Secretion:
LGALS3, which lacks a signal peptide, is secreted via a TMED10-dependent unconventional pathway through the ER-Golgi intermediate compartment (ERGIC) (zhang2020atranslocationpathway pages 1-4). TMED10 mediates the translocation of leaderless cargoes, including LGALS3, into secretory vesicles. This process is enhanced by chaperones HSP90A/HSP90AB1 and involves protein unfolding (zhang2020atranslocationpathway pages 1-4).
PHB2 and Mitophagy:
In the context of PINK1/Parkin-mediated mitophagy, LGALS3 relocalizes from the cytosol to damaged mitochondria after outer membrane rupture. It interacts with the inner mitochondrial membrane protein PHB2 and recruits ULK1 to promote mitophagy (liu2025galectin3directsmitophagy pages 1-2). This represents an emerging intracellular function.
Importantly, LGALS3 is a binding and scaffolding lectin without known intrinsic enzymatic or catalytic activity (garciarevilla2023galectin3shapestoxic pages 1-2). This should be reflected in GO molecular function annotations by avoiding enzyme activity terms.
Core Intracellular Function:
The most robustly supported biological process for LGALS3 in recent literature is its role in sensing and responding to lysosomal membrane damage. When lysosomes are damaged by lysosomotropic agents, pathogenic protein aggregates, or intracellular pathogens, lumenal glycans become exposed to the cytosol. Cytosolic LGALS3 binds these exposed glycans and triggers a coordinated response termed MERIT (Membrane repair, Removal, and Replacement) (jia2020meritacellular pages 1-4).
Lysosomal Membrane Repair:
LGALS3 recruits ESCRT machinery (PDCD6IP/ALIX, CHMP proteins) to repair damaged lysosomal membranes (jia2020meritacellular pages 1-4). This ESCRT-dependent repair occurs early in the damage response and is critical for maintaining lysosomal integrity.
Lysophagy:
When damage is extensive, LGALS3 cooperates with TRIM16 to engage autophagy machinery, recruiting ATG16L1, ULK1, and LC3 to enclose and degrade damaged lysosomes via lysophagy (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2, wang2023periplocinsuppressesthe pages 1-2). This selective autophagy pathway is essential for maintaining cellular homeostasis under lysosomal stress. LGALS3 knockout exacerbates lysosomal damage and reduces autophagic clearance efficiency (jia2020meritacellular pages 1-4).
TFEB-Mediated Lysosomal Biogenesis:
In the absence of LGALS3, compensatory mechanisms include increased TFEB nuclear translocation to drive de novo lysosomal biogenesis (jia2020meritacellular pages 1-4). This suggests that LGALS3-dependent repair and removal pathways work in concert with transcriptional programs to maintain the lysosomal network.
| Biological process | Role/mechanism | Evidence strength | Key citations | Core vs. contextual designation |
|---|---|---|---|---|
| Lysosomal damage response | Cytosolic LGALS3 binds lumenal glycans exposed by damaged lysosomal/endosomal membranes and helps organize the response to membrane injury | Strong | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) | Core intracellular function |
| Lysosomal membrane repair | Recruits/organizes ESCRT-associated factors including PDCD6IP/ALIX and CHMP proteins at damaged lysosomes, promoting membrane repair | Strong | (jia2020meritacellular pages 1-4) | Core intracellular function |
| Lysophagy / selective autophagic removal of damaged lysosomes | Cooperates with TRIM16 to recruit autophagy machinery, including ATG16L1 and LC3-related factors, to remove heavily damaged lysosomes | Strong | (jia2020meritacellular pages 1-4, wang2023periplocinsuppressesthe pages 1-2, burbidge2022lgals3(galectin3) pages 1-2) | Core intracellular function |
| Secretory autophagy / unconventional secretion | Supports autophagy-linked unconventional secretion of cargo such as α-synuclein after vesicular damage; secretion also depends on TRIM16 and ATG16L1 | Strong | (burbidge2022lgals3(galectin3) pages 1-2, zhang2020atranslocationpathway pages 1-4) | Contextual but well supported |
| Autophagy-related organelle quality control | Functions as a damage sensor/scaffold that mobilizes core autophagy regulators to injured organelles beyond lysosomes | Strong | (jia2020meritacellular pages 1-4, liu2025galectin3directsmitophagy pages 1-2) | Core mechanistic extension |
| Mitophagy | Relocalizes to damaged mitochondria after Parkin/proteasome-dependent outer membrane rupture, interacts with PHB2, and recruits ULK1 to promote mitophagy | Moderate | (liu2025galectin3directsmitophagy pages 1-2) | Contextual / emerging |
| Inflammation / innate immune activation | Broadly modulates inflammatory signaling and immune cell activation; acts in activated microglia/macrophages and other immune contexts | Strong | (zaborska2023theroleof pages 1-3, tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2) | Contextual pleiotropic role |
| Neuroinflammation | Upregulated in disease-associated microglia and promotes microglial activation, inflammatory responses, and neurodegeneration-associated programs | Strong | (tan2021galectin3akey pages 1-2, siew2024galectin3aggravatesmicroglial pages 1-2, lozinski2024emergingroleof pages 1-2) | Contextual but strongly supported in CNS disease |
| Tauopathy progression | Released from microglia in free and EV-associated forms; enhances pathogenic tau accumulation, fibrillation, microglial activation, synaptic loss, and memory impairment | Strong | (siew2024galectin3aggravatesmicroglial pages 1-2) | Contextual disease role |
| Parkinson disease / α-synuclein proteostasis | Mediates secretion of α-synuclein after vesicle damage and can also shape toxic α-synuclein strains, linking LGALS3 to synucleinopathy progression | Moderate | (burbidge2022lgals3(galectin3) pages 1-2, garciarevilla2023galectin3shapestoxic pages 1-2) | Contextual disease role |
| Fibrosis / fibrogenic signaling | Extracellular galectin-3 promotes TGF-β1 activation/signaling through glycosylation-dependent interactions with integrins and TGFβRII; linked to collagen/TIMP1/hyaluronan production | Strong | (calver2024definingthemechanism pages 1-2) | Contextual but strongly supported |
| Cell-surface receptor organization and signaling | Forms glycan lattices that regulate receptor clustering, signaling, and internalization, thereby shaping downstream biological responses | Strong | (mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2) | Core mechanistic function driving many contextual processes |
| Apoptosis regulation | Reported to modulate apoptosis in multiple settings; in some contexts promotes survival, while in others damaged-organelle stress and associated pathways correlate with apoptosis outcomes | Moderate | (zaborska2023theroleof pages 1-3, wang2023periplocinsuppressesthe pages 1-2, lozinski2024emergingroleof pages 1-2) | Contextual and bidirectional |
| Pyroptosis / inflammasome-linked cell death | Evidence for direct LGALS3 involvement is limited and context-dependent; recent work more strongly supports galectin-8 than galectin-3 for rapid noncanonical inflammasome sensing, cautioning against broad LGALS3 pyroptosis annotation | Weak | (shivcharan2025endolysosomaldamagesurveillance pages 1-3) | Likely overextended if used broadly |
| Pre-mRNA splicing / nuclear RNA processing | Nuclear galectin-3 has long been associated with pre-mRNA splicing regulation; recent reviews continue to cite this as an established nuclear role | Moderate | (zaborska2023theroleof pages 1-3, zhang2025multifacetedrolesof pages 10-11, radziejewska2023galectin3andepithelial pages 1-2) | Core but less emphasized in recent disease literature |
| Development / gliogenesis / neural progenitor behavior | Evidence from mammalian systems suggests roles in neural progenitor motility and gliogenesis; supports developmental influence but not a universally established core human developmental annotation | Moderate | (lozinski2024emergingroleof pages 1-2) | Contextual / developmental |
| Development / epithelial differentiation and implantation-related processes | Reviews and related studies indicate roles in epithelial differentiation and reproductive/implantation contexts, but these are more specialized and should be annotated cautiously | Weak to moderate | (zhang2025multifacetedrolesof pages 10-11) | Contextual / specialized |
| Host defense against endomembrane-damaging stress | Protects cells from lysosomotropic drugs, microbial damage, and toxic protein aggregates by coordinating repair, removal, and replacement pathways | Strong | (jia2020meritacellular pages 1-4) | Core intracellular stress-response role |
Table: This table summarizes the best-supported biological processes involving human LGALS3/galectin-3, separating core intracellular damage-response functions from broader context-specific roles in inflammation, fibrosis, neurodegeneration, and cell death. It is useful for GO annotation review because it highlights where evidence is strongest and where annotations may be overextended.
Recent proteomic studies identify LGALS3 as significantly enriched at ruptured mitochondrial outer membranes during PINK1/Parkin-dependent mitophagy (liu2025galectin3directsmitophagy pages 1-2). LGALS3 relocalizes from the cytosol to damaged mitochondria, interacts with PHB2, and recruits ULK1. Mutations disrupting LGALS3's liquid-liquid phase separation properties abrogate its mitophagy function, suggesting that biomolecular condensate formation around damaged mitochondria is critical for organellar quality control (liu2025galectin3directsmitophagy pages 1-2). While this represents an emerging and well-supported mechanism, it is more context-specific than the lysosomal damage response.
LGALS3 participates in autophagy-dependent unconventional secretion pathways. In human midbrain dopamine neurons, LGALS3 mediates the release of α-synuclein (SNCA) following vesicular damage (burbidge2022lgals3(galectin3) pages 1-2). This secretion is dependent on TRIM16 and ATG16L1, providing evidence that LGALS3 functions in a specialized autophagic secretory pathway. Exogenous SNCA fibrils that rupture endocytic vesicles trigger LGALS3 recruitment and subsequent secretion of both exogenous and endogenous SNCA (burbidge2022lgals3(galectin3) pages 1-2). This mechanism may contribute to the cell-to-cell transmission of pathogenic proteins in neurodegenerative diseases.
LGALS3 is widely recognized as a modulator of innate and adaptive immune responses (tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2). It is upregulated in activated microglia and macrophages and acts as a pro-inflammatory mediator. LGALS3 can bind to toll-like receptor 4 (TLR4) and TREM2, influencing microglial activation states (tan2021galectin3akey pages 1-2). In the CNS, LGALS3 promotes microglial activation, cytokine production, and inflammatory signaling pathways including NF-κB and JAK-STAT (tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2). However, these inflammatory roles are highly context-dependent and vary across tissue types and disease states.
Extracellular LGALS3 promotes fibrosis by potentiating TGF-β1 activation. It facilitates lysophosphatidic acid (LPA)-induced integrin-mediated TGF-β1 activation in human lung fibroblasts (calver2024definingthemechanism pages 1-2). LGALS3 binding to αv integrins and TGFβRII enhances downstream SMAD signaling, leading to increased collagen deposition, TIMP1 production, and hyaluronan secretion in lung fibrosis models (calver2024definingthemechanism pages 1-2). Galectin-3 inhibitors reduce these fibrotic markers in precision-cut lung slices from IPF patients (calver2024definingthemechanism pages 1-2). This fibrogenic activity is well-supported but context-specific to fibrotic diseases.
Tauopathy:
LGALS3 is upregulated in microglia in Alzheimer's disease and frontotemporal lobar dementia (siew2024galectin3aggravatesmicroglial pages 1-2). Pathogenic tau (pTau) triggers the release of LGALS3 from microglia in both free and extracellular vesicle-associated forms. Both forms increase pathogenic tau accumulation in recipient cells and enhance tau fibrillation (siew2024galectin3aggravatesmicroglial pages 1-2). Single-cell RNA-seq analysis of tauopathy mouse models reveals a population of Gal3-associated microglia with enhanced inflammatory and immune-response programs. Genetic deletion of Gal3 in THY-Tau22 mice suppresses microglial activation, reduces pTau levels and synaptic loss, and rescues memory impairment (siew2024galectin3aggravatesmicroglial pages 1-2).
Parkinson's Disease:
In PD, LGALS3 is found in Lewy bodies and other α-synuclein deposits, as well as associated with disrupted lysosomes (garciarevilla2023galectin3shapestoxic pages 1-2). In vitro, Gal3 interacts with α-synuclein fibrils and affects their spatial propagation and stability, producing short, amorphous toxic strains (garciarevilla2023galectin3shapestoxic pages 1-2). In a mouse model of PD (intranigral αSyn overexpression), Gal3 knockout leads to increased intracellular αSyn accumulation but preserved dopaminergic integrity and motor function, suggesting a complex role in shaping toxic strains (garciarevilla2023galectin3shapestoxic pages 1-2).
LGALS3 has been reported to modulate apoptosis in multiple contexts, with bidirectional effects (survival vs. death) depending on cellular context (zaborska2023theroleof pages 1-3, lozinski2024emergingroleof pages 1-2). In some settings, LGALS3 promotes cell survival by inhibiting apoptosis, while in others, lysosomal damage and associated LGALS3-mediated stress responses correlate with apoptotic outcomes (wang2023periplocinsuppressesthe pages 1-2). These effects are context-dependent and should be annotated with caution.
While LGALS3 has been implicated in some inflammatory contexts, recent mechanistic studies emphasize that galectin-8, not galectin-3, is the primary galectin coupling endolysosomal damage sensing to noncanonical inflammasome activation and pyroptosis (shivcharan2025endolysosomaldamagesurveillance pages 1-3). In human epithelial cells, galectin-8 licenses caspase-4-mediated pyroptosis during intracellular bacterial infections, whereas LGALS3 depletion had minimal impact on Salmonella-induced pyroptosis (shivcharan2025endolysosomaldamagesurveillance pages 1-3). Broad GO annotations attributing pyroptosis regulation to LGALS3 would be overextended based on current evidence.
Available evidence links LGALS3 to synaptic loss in tauopathy and neurodegeneration (siew2024galectin3aggravatesmicroglial pages 1-2), but there is limited direct evidence that LGALS3 itself functions as a core synaptic remodeling factor in healthy human neurons. Synaptic effects appear largely indirect, mediated by microglial activation and neuroinflammatory pathways (siew2024galectin3aggravatesmicroglial pages 1-2, lozinski2024emergingroleof pages 1-2). Direct synaptic function annotations should be approached with caution.
Some reviews discuss LGALS3 in neural progenitor motility, gliogenesis, and specialized developmental contexts (lozinski2024emergingroleof pages 1-2, zhang2025multifacetedrolesof pages 10-11). However, these developmental annotations are not as robustly established in humans as the lectin and damage-response functions. Developmental process annotations should be restricted to directly evidenced systems and not over-generalized.
Cytoplasm/Cytosol:
LGALS3 is synthesized on free ribosomes in the cytoplasm, lacks a signal peptide, and exists as a soluble intracellular pool before relocalization or secretion (tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2). This is a well-supported core cellular component annotation.
Nucleus:
LGALS3 is present in the nucleus, where it has been implicated in pre-mRNA splicing and gene regulation (zhang2025multifacetedrolesof pages 10-11, radziejewska2023galectin3andepithelial pages 1-2, tan2021galectin3akey pages 1-2). Nuclear localization is consistently noted in reviews, though specific subnuclear compartments are less well-defined.
Extracellular Space:
LGALS3 is secreted via unconventional (non-classical) pathways independent of the ER-Golgi secretory route (zhang2020atranslocationpathway pages 1-4). Extracellular LGALS3 binds glycans on cell-surface and extracellular matrix glycoproteins, modulating signaling, adhesion, and inflammation (calver2024definingthemechanism pages 1-2, mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2). This is a strong extracellular annotation, but GO should not imply conventional signal-peptide-mediated secretion.
Cell Surface / Plasma Membrane-Associated:
Secreted LGALS3 remains tethered to the cell surface through glycan interactions and forms lattices that regulate receptor clustering and signaling (mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2). It should be annotated as cell-surface-associated rather than an integral membrane protein.
ERGIC (ER-Golgi Intermediate Compartment):
LGALS3 uses a TMED10-dependent translocation pathway through the ERGIC for unconventional secretion (zhang2020atranslocationpathway pages 1-4). This is a pathway-level localization rather than stable constitutive residence, and GO annotations should reflect this transient association.
Damaged Lysosomes:
Upon lysosomal membrane damage, cytosolic LGALS3 binds exposed lumenal glycans and marks damaged lysosomes for repair or removal (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2). This is a highly context-specific, damage-induced localization that is among the strongest intracellular findings for LGALS3.
Damaged Mitochondria:
During mitophagy, LGALS3 relocalizes to damaged mitochondria after outer membrane rupture (liu2025galectin3directsmitophagy pages 1-2). This is an emerging but compelling localization, though not a constitutive mitochondrial component annotation.
Extracellular Vesicles:
In CNS disease contexts, LGALS3 is released in extracellular vesicle-associated forms, accompanying pathogenic cargo transmission (siew2024galectin3aggravatesmicroglial pages 1-2). This is a useful contextual annotation in neurodegeneration.
Lewy Bodies (Pathology-Specific):
LGALS3 associates with Lewy body outer regions and disrupted lysosomes in Parkinson's disease tissue (garciarevilla2023galectin3shapestoxic pages 1-2). However, this is a pathology-linked association rather than normal cellular localization, and GO annotations to disease-specific structures like Lewy bodies should be avoided or carefully contextualized.
| Localization/Complex | Functional context | Evidence strength | Key citations | Annotation notes |
|---|---|---|---|---|
| Cytoplasm / cytosol | Major intracellular pool; LGALS3 is synthesized on free ribosomes, lacks a signal peptide, and functions as a soluble lectin/scaffold before secretion or relocalization | Strong | (tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2) | Safe core cellular component annotation; “cytosol” is well supported for the soluble intracellular pool |
| Nucleus | Nuclear LGALS3 is linked to pre-mRNA splicing and gene-regulatory functions; reviews consistently note nucleo-cytoplasmic distribution | Moderate to strong | (zhang2025multifacetedrolesof pages 10-11, radziejewska2023galectin3andepithelial pages 1-2, tan2021galectin3akey pages 1-2) | Nuclear annotation is supportable, but specific nuclear subcompartments are less clearly defined here |
| Extracellular space / secreted pool | Secreted by non-classical/unconventional pathways; extracellular LGALS3 binds glycans and regulates signaling, adhesion, fibrosis, and inflammatory communication | Strong | (calver2024definingthemechanism pages 1-2, mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2, zhang2020atranslocationpathway pages 1-4) | Strong extracellular annotation; should not imply conventional ER-Golgi secretion via signal peptide |
| Cell surface / plasma membrane-associated | Secreted LGALS3 remains tethered through glycoprotein/glycolipid interactions and forms lattices that reorganize receptors and modulate signaling/internalization | Strong | (mukherjee2025galectin3integratorof pages 1-2, lozinski2024emergingroleof pages 1-2) | Best treated as cell-surface associated rather than integral membrane protein |
| ER-Golgi intermediate compartment (ERGIC) / TMED10 pathway | Leaderless LGALS3 uses TMED10-dependent unconventional secretion through ERGIC-associated translocation machinery | Moderate to strong | (zhang2020atranslocationpathway pages 1-4) | Supportive for pathway-level localization; use caution if assigning stable ERGIC residence as a constitutive component |
| Damaged lysosomes / damaged endolysosomal membranes | Cytosolic LGALS3 binds exposed lumenal glycans after membrane rupture and marks damaged lysosomes for repair or removal | Strong | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) | Very strong context-dependent localization; ideal for damage-response/lysophagy-related annotation |
| ESCRT-associated lysosomal repair complex | At damaged lysosomes, LGALS3 recruits/organizes PDCD6IP/ALIX and CHMP proteins to promote membrane repair | Strong | (jia2020meritacellular pages 1-4) | Supports annotation to repair assemblies at damaged lysosomes; context-specific, not constitutive lysosome residence |
| TRIM16-ATG16L1-ULK1 autophagy initiation scaffold at damaged lysosomes | LGALS3 cooperates with TRIM16 to recruit ATG16L1, ULK1, LC3-related machinery and drive lysophagy/secretory autophagy | Strong | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) | Strong complex-level evidence in damaged-organelle autophagy; annotate as inducible/contextual complex |
| Damaged mitochondria | During PINK1/Parkin-mediated mitophagy, LGALS3 relocalizes from cytosol to mitochondria after outer membrane rupture and encloses damaged organelles | Moderate | (liu2025galectin3directsmitophagy pages 1-2) | Emerging but compelling context-specific localization; not a constitutive mitochondrial protein |
| PHB2-ULK1 mitophagy-related complex | On damaged mitochondria, LGALS3 interacts with IMM protein PHB2 and promotes ULK1 recruitment for mitophagy | Moderate | (liu2025galectin3directsmitophagy pages 1-2) | Best treated as an inducible mitophagy complex; evidence is recent and may warrant cautious GO use |
| Integrin-associated cell-surface complex | Extracellular LGALS3 binds αv integrins, including αvβ1/αvβ5/αvβ6, and colocalizes with β1 integrin on fibroblast surfaces to potentiate TGF-β signaling | Strong | (calver2024definingthemechanism pages 1-2) | Good support for protein-containing extracellular/cell-surface complexes; likely context-specific rather than universal |
| TGFβRII-integrin signaling assembly | LGALS3 binds TGFβRII and αv integrins in a glycosylation-dependent manner to enhance profibrotic signaling | Moderate to strong | (calver2024definingthemechanism pages 1-2) | Strong disease-context evidence; avoid overgeneralizing to all cell types |
| Extracellular vesicle-associated pool | In neuronal/microglial disease contexts, LGALS3 can be released in EV-associated form and accompany pathogenic cargo transmission | Moderate | (siew2024galectin3aggravatesmicroglial pages 1-2) | Useful contextual annotation in neurodegeneration, but not necessarily a core constitutive component |
| α-Synuclein secretory autophagy compartment | In vesicle-damage settings, LGALS3-positive compartments participate in autophagic-lysosomal secretion of SNCA/α-synuclein | Moderate | (burbidge2022lgals3(galectin3) pages 1-2) | Contextual neuronal annotation; strong mechanistic value but specialized |
| Lewy body / α-synuclein deposit association | In PD tissue, GAL3 associates with Lewy body outer regions and disrupted lysosomes linked to α-synuclein pathology | Moderate | (garciarevilla2023galectin3shapestoxic pages 1-2) | Disease-pathology association is real, but direct GO cellular component annotation to Lewy bodies may be too pathology-specific |
| Microglial intracellular/extracellular pool in CNS disease | Disease-associated microglia upregulate and release LGALS3, including free and EV-associated forms, during tauopathy/neuroinflammation | Strong | (siew2024galectin3aggravatesmicroglial pages 1-2, lozinski2024emergingroleof pages 1-2) | Supports contextual cell-type-specific localization in microglia, not a distinct core organelle term |
| Not an integral membrane or classical secretory-pathway luminal protein | LGALS3 lacks a signal peptide and is not inserted into membranes like a transmembrane cargo | Strong | (tan2021galectin3akey pages 1-2, zhang2020atranslocationpathway pages 1-4) | Important negative annotation note: avoid membrane-integral or classical secretory-lumen assumptions |
Table: This table summarizes the best-supported subcellular localizations and inducible protein complexes of human galectin-3/LGALS3, emphasizing where the evidence is strongest for GO cellular component review. It is especially useful for separating core localization terms from damage-responsive or disease-contextual assemblies.
TRIM16-ATG16L1-ULK1 Complex (Lysophagy):
At damaged lysosomes, LGALS3 cooperates with TRIM16 to recruit ATG16L1, ULK1, and LC3-related autophagy machinery (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2). This is a strong, inducible complex annotation.
ESCRT-Associated Repair Complex:
LGALS3 recruits PDCD6IP/ALIX, CHMP4A, and CHMPB for lysosomal membrane repair (jia2020meritacellular pages 1-4). This is a context-dependent repair complex.
PHB2-ULK1 Mitophagy Complex:
On damaged mitochondria, LGALS3 interacts with PHB2 and recruits ULK1 (liu2025galectin3directsmitophagy pages 1-2). This is an emerging mitophagy complex.
Integrin-TGFβRII Signaling Assembly:
Extracellular LGALS3 forms complexes with αv integrins and TGFβRII in fibrotic contexts (calver2024definingthemechanism pages 1-2). This is a strong disease-context complex.
| Potential annotation issue | Risk level | Explanation | Supporting evidence/citation |
|---|---|---|---|
| Over-extending pleiotropic disease roles into core GO terms | High | LGALS3 participates in many disease-associated processes, but the most consistently supported core functions are β-galactoside glycan binding, glycan-dependent lattice/scaffold formation, and damage sensing at ruptured endomembranes. Broad annotations to all reported disease outcomes risk conflating downstream phenotypes with primary molecular function. | (radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2, jia2020meritacellular pages 1-4, lozinski2024emergingroleof pages 1-2) |
| Conflating core function with context-specific inflammatory/fibrotic signaling | High | Strong evidence supports extracellular interactions with integrins and TGFβRII in specific fibrotic settings, but these should not automatically be treated as universal core functions across all cell types and tissues. | (calver2024definingthemechanism pages 1-2) |
| Annotating pathology-specific locations such as Lewy bodies as normal cellular component | High | GAL3 is associated with Lewy body outer regions and disrupted lysosomes in Parkinson disease tissue, but this is a pathology-linked association rather than evidence of a constitutive normal subcellular localization. | (garciarevilla2023galectin3shapestoxic pages 1-2) |
| Synaptic remodeling / synapse organization annotations | High | Available evidence links LGALS3 to neuroinflammation, tauopathy, synaptic loss, and neuronal disease progression, but there is limited direct evidence that human LGALS3 is a core synaptic remodeling factor. Synaptic effects appear largely indirect via microglia/pathology. | (siew2024galectin3aggravatesmicroglial pages 1-2, lozinski2024emergingroleof pages 1-2) |
| Broad pyroptosis annotation | High | Evidence in the reviewed set does not support LGALS3 as a general pyroptosis effector. A recent mechanistic study emphasizes galectin-8, not galectin-3, in coupling endomembrane damage sensing to noncanonical inflammasome activation, so broad LGALS3 pyroptosis annotation would be overextended. | (shivcharan2025endolysosomaldamagesurveillance pages 1-3) |
| Developmental process annotations without strong human-specific support | Moderate | Some reviews discuss roles in neural progenitor behavior, gliogenesis, or specialized developmental contexts, but these are not as strongly established in human LGALS3 as the lectin/damage-response functions. Developmental annotations should be restricted to directly evidenced systems. | (lozinski2024emergingroleof pages 1-2, zhang2025multifacetedrolesof pages 10-11) |
| Treating unconventional secretion as classical secretion | High | LGALS3 lacks a signal peptide, is synthesized on free ribosomes, and uses non-classical/TMED10-dependent unconventional secretion routes. GO handling should avoid implying conventional ER-Golgi lumenal secretion as the default mechanism. | (tan2021galectin3akey pages 1-2, zhang2020atranslocationpathway pages 1-4) |
| Assigning stable ERGIC localization instead of pathway-context localization | Moderate | TMED10-dependent translocation places LGALS3 in an ERGIC-associated unconventional secretion pathway, but this does not necessarily justify a constitutive ERGIC component annotation for LGALS3. | (zhang2020atranslocationpathway pages 1-4) |
| Treating mitophagy role as universally established core biology | Moderate | Recent evidence supports LGALS3 recruitment to damaged mitochondria and PHB2/ULK1-linked mitophagy, but this is emerging and more context-specific than the better-established lysosomal damage response. | (liu2025galectin3directsmitophagy pages 1-2) |
| Under-annotating lysosomal damage response / lysophagy because of focus on extracellular roles | Low | In contrast to several overextension risks, there is strong mechanistic evidence that LGALS3 binds exposed lumenal glycans on damaged lysosomes and coordinates ESCRT repair and TRIM16-dependent lysophagy; this appears among the strongest intracellular process annotations. | (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2) |
Table: This table highlights the main GO annotation risks for human LGALS3/galectin-3, distinguishing well-supported core functions from disease- or context-specific extensions. It is useful for avoiding over-annotation while preserving strong evidence for lectin activity, unconventional secretion, and lysosomal damage response.
1. Over-extending Pleiotropic Disease Roles:
LGALS3 participates in many disease-associated processes, but the most consistently supported core functions are β-galactoside glycan binding, lattice formation, and endomembrane damage sensing. Broad annotations to all reported downstream disease phenotypes risk conflating secondary/tertiary effects with primary molecular function.
2. Broad Pyroptosis Annotation:
Current evidence does not support LGALS3 as a general pyroptosis effector. Galectin-8 is the primary galectin mediating noncanonical inflammasome sensing (shivcharan2025endolysosomaldamagesurveillance pages 1-3). LGALS3 pyroptosis annotations should be avoided or heavily qualified.
3. Synaptic Remodeling:
Evidence for direct LGALS3 involvement in synaptic remodeling is limited. Effects on synapse loss appear indirect via neuroinflammation (siew2024galectin3aggravatesmicroglial pages 1-2, lozinski2024emergingroleof pages 1-2).
4. Pathology-Specific Localizations (e.g., Lewy Bodies):
Associations with disease-specific structures like Lewy bodies should not be treated as normal cellular component annotations (garciarevilla2023galectin3shapestoxic pages 1-2).
5. Treating Unconventional Secretion as Classical Secretion:
LGALS3 lacks a signal peptide and uses TMED10-dependent unconventional routes. GO should not imply conventional ER-Golgi lumenal secretion (tan2021galectin3akey pages 1-2, zhang2020atranslocationpathway pages 1-4).
1. Developmental Processes:
Some evidence exists for developmental roles, but these are not as robustly established in humans as core lectin functions (lozinski2024emergingroleof pages 1-2, zhang2025multifacetedrolesof pages 10-11).
2. Mitophagy:
While emerging evidence is compelling (liu2025galectin3directsmitophagy pages 1-2), mitophagy is more context-specific than the well-established lysosomal damage response. Annotations should reflect this.
3. ERGIC Localization:
TMED10-dependent translocation involves ERGIC, but this is a pathway-associated localization rather than stable residence (zhang2020atranslocationpathway pages 1-4).
1. Lysosomal Damage Response / Lysophagy:
Among the strongest intracellular process annotations, with extensive mechanistic support (jia2020meritacellular pages 1-4, burbidge2022lgals3(galectin3) pages 1-2).
2. β-Galactoside Binding Lectin Activity:
Core canonical molecular function with decades of support (zaborska2023theroleof pages 1-3, radziejewska2023galectin3andepithelial pages 1-2, mukherjee2025galectin3integratorof pages 1-2).
3. Cytoplasm, Nucleus, Extracellular Space:
Well-documented subcellular localizations (tan2021galectin3akey pages 1-2, lozinski2024emergingroleof pages 1-2).
Comprehensive review of LGALS3 structure, lectin activity, O-GlcNAc regulation, and unconventional secretion. Emphasizes nutrient-driven regulation and disease biomarker roles.
Zhang et al. (2025). Multifaceted roles of Galectins: from carbohydrate binding to targeted cancer therapy. Biomarker Research 13. (zhang2025multifacetedrolesof pages 10-11)
Detailed structural characterization, ligand-binding properties, and cancer-related functions of galectin family members.
Zaborska et al. (2023). The Role of Galectin-3 in Heart Failure. Int. J. Mol. Sci. 24, 13111. (zaborska2023theroleof pages 1-3)
Review of LGALS3 in cardiac fibrosis, inflammation, and ventricular remodeling.
Radziejewska (2023). Galectin-3 and Epithelial MUC1 Mucin—Interactions Supporting Cancer Development. Cancers 15, 2680. (radziejewska2023galectin3andepithelial pages 1-2)
Landmark study defining LGALS3's role in ESCRT-mediated lysosomal repair and TRIM16-dependent lysophagy.
Burbidge et al. (2022). LGALS3 mediates an unconventional secretion of SNCA/α-synuclein. Autophagy 18, 1020-1048. (burbidge2022lgals3(galectin3) pages 1-2)
Demonstrates LGALS3-mediated secretory autophagy of α-synuclein in human midbrain neurons.
Wang et al. (2023). Periplocin suppresses colorectal cancer by triggering LGALS3-mediated lysophagy. Autophagy 19, 3132-3150. (wang2023periplocinsuppressesthe pages 1-2)
Demonstrates Gal3 upregulation in tauopathy, EV-associated release, and rescue of tau pathology and memory deficits in Gal3 knockout mice.
García-Revilla et al. (2023). Galectin-3 shapes toxic alpha-synuclein strains in Parkinson's disease. Acta Neuropathol. 146, 51-75. (garciarevilla2023galectin3shapestoxic pages 1-2)
Links Gal3 to α-synuclein aggregation, Lewy body formation, and toxic strain production in PD.
Tan et al. (2021). Galectin-3: a key player in microglia-mediated neuroinflammation and Alzheimer's disease. Cell Biosci. 11, 78. (tan2021galectin3akey pages 1-2)
Lozinski et al. (2024). Emerging role of galectin 3 in neuroinflammation and neurodegeneration. Neural Regen. Res. 19, 2004-2009. (lozinski2024emergingroleof pages 1-2)
Liu et al. (2025). Galectin-3 directs mitophagy in response to Parkin-/proteasome-dependent rupture of mitochondrial outer membrane. Biol. Direct 20, 108. (liu2025galectin3directsmitophagy pages 1-2)
Zhang et al. (2020). A Translocation Pathway for Vesicle-Mediated Unconventional Protein Secretion. Cell 181, 637-652. (zhang2020atranslocationpathway pages 1-4)
Shivcharan et al. (2025). Endolysosomal damage surveillance enables rapid inflammasome sensing of pathogens. Cell Rep. 44, 116002. (shivcharan2025endolysosomaldamagesurveillance pages 1-3)
The strongest evidence supports LGALS3 annotations for:
Strong but context-dependent evidence supports:
Annotations should be cautious or avoided for:
This report provides a comprehensive, evidence-based foundation for GO annotation review of LGALS3, balancing the breadth of LGALS3 biology with the need for precision and context-awareness in annotation.
References
(radziejewska2023galectin3andepithelial pages 1-2): Iwona Radziejewska. Galectin-3 and epithelial muc1 mucin—interactions supporting cancer development. Cancers, 15:2680, May 2023. URL: https://doi.org/10.3390/cancers15102680, doi:10.3390/cancers15102680. This article has 22 citations.
(tan2021galectin3akey pages 1-2): Yinyin Tan, Yanqun Zheng, Daiwen Xu, Zhanfang Sun, Huan Yang, and Qingqing Yin. Galectin-3: a key player in microglia-mediated neuroinflammation and alzheimer's disease. Cell & Bioscience, Apr 2021. URL: https://doi.org/10.1186/s13578-021-00592-7, doi:10.1186/s13578-021-00592-7. This article has 118 citations and is from a peer-reviewed journal.
(mukherjee2025galectin3integratorof pages 1-2): Mana Mohan Mukherjee, Devin Biesbrock, and John A. Hanover. Galectin-3: integrator of signaling via hexosamine flux. Biomolecules, Jul 2025. URL: https://doi.org/10.3390/biom15071028, doi:10.3390/biom15071028. This article has 8 citations.
(jia2020meritacellular pages 1-4): Jingyue Jia, Aurore Claude-Taupin, Yuexi Gu, Seong Won Choi, Ryan Peters, Bhawana Bissa, Michal H. Mudd, Lee Allers, Sandeep Pallikkuth, Keith A. Lidke, Michelle Salemi, Brett Phinney, Muriel Mari, Fulvio Reggiori, and Vojo Deretic. Merit, a cellular system coordinating lysosomal repair, removal and replacement. Autophagy, 16:1539-1541, Jun 2020. URL: https://doi.org/10.1080/15548627.2020.1779451, doi:10.1080/15548627.2020.1779451. This article has 44 citations and is from a domain leading peer-reviewed journal.
(burbidge2022lgals3(galectin3) pages 1-2): Kevin Burbidge, David J. Rademacher, Jessica Mattick, Stephanie Zack, Andrea Grillini, Luc Bousset, Ochan Kwon, Konrad Kubicki, Alexander Simon, Ronald Melki, and Edward M. Campbell. Lgals3 (galectin 3) mediates an unconventional secretion of snca/α-synuclein in response to lysosomal membrane damage by the autophagic-lysosomal pathway in human midbrain dopamine neurons. Autophagy, 18:1020-1048, Oct 2022. URL: https://doi.org/10.1080/15548627.2021.1967615, doi:10.1080/15548627.2021.1967615. This article has 68 citations and is from a domain leading peer-reviewed journal.
(calver2024definingthemechanism pages 1-2): Jessica F. Calver, Nimesh R. Parmar, Gemma Harris, Ryan M. Lithgo, Panayiota Stylianou, Fredrik R. Zetterberg, Bibek Gooptu, Alison C. Mackinnon, Stephen B. Carr, Lee A. Borthwick, David J. Scott, Iain D. Stewart, Robert J. Slack, R. Gisli Jenkins, and Alison E. John. Defining the mechanism of galectin-3–mediated tgf-β1 activation and its role in lung fibrosis. Journal of Biological Chemistry, 300:107300, Jun 2024. URL: https://doi.org/10.1016/j.jbc.2024.107300, doi:10.1016/j.jbc.2024.107300. This article has 42 citations and is from a domain leading peer-reviewed journal.
(shivcharan2025endolysosomaldamagesurveillance pages 1-3): Sonia Shivcharan, Doulathunnisa Ahamed Younis, Skylar S. Wright, Chengliang Wang, Bharat Behl, Patience Shumba, Kristina N. Delgado, Arshmeet K. Chawla, Neal M. Alto, Noorjahan Panjwani, Sivapriya Kailasan Vanaja, Jianbin Ruan, Zhichao Fan, and Vijay A. Rathinam. Endolysosomal damage surveillance enables rapid inflammasome sensing of pathogens. Cell Reports, 44:116002, Aug 2025. URL: https://doi.org/10.1016/j.celrep.2025.116002, doi:10.1016/j.celrep.2025.116002. This article has 3 citations and is from a highest quality peer-reviewed journal.
(siew2024galectin3aggravatesmicroglial pages 1-2): Jian Jing Siew, Hui-Mei Chen, Feng-Lan Chiu, Chia-Wei Lee, Yao-Ming Chang, Hung-Lin Chen, Thi Ngoc Anh Nguyen, Hung-Ting Liao, Mengyu Liu, Hsiao-Tien Hagar, Yung-Chen Sun, Hsing-Lin Lai, Min-Hao Kuo, David Blum, Luc Buée, Lee-Way Jin, Shih-Yu Chen, Tai-Ming Ko, Jie-Rong Huang, Hung-Chih Kuo, Fu-Tong Liu, and Yijuang Chern. Galectin-3 aggravates microglial activation and tau transmission in tauopathy. Journal of Clinical Investigation, Jan 2024. URL: https://doi.org/10.1172/jci165523, doi:10.1172/jci165523. This article has 46 citations and is from a highest quality peer-reviewed journal.
(garciarevilla2023galectin3shapestoxic pages 1-2): Juan García-Revilla, Antonio Boza-Serrano, Yiyun Jin, Devkee M. Vadukul, Jesús Soldán-Hidalgo, Lluís Camprubí-Ferrer, Marta García-Cruzado, Isak Martinsson, Oxana Klementieva, Rocío Ruiz, Francesco A. Aprile, Tomas Deierborg, and José Luis Venero. Galectin-3 shapes toxic alpha-synuclein strains in parkinson’s disease. Acta Neuropathologica, 146:51-75, May 2023. URL: https://doi.org/10.1007/s00401-023-02585-x, doi:10.1007/s00401-023-02585-x. This article has 39 citations and is from a highest quality peer-reviewed journal.
(lozinski2024emergingroleof pages 1-2): Brian M. Lozinski, Khanh Ta, and Yifei Dong. Emerging role of galectin 3 in neuroinflammation and neurodegeneration. Neural Regeneration Research, 19:2004-2009, Dec 2023. URL: https://doi.org/10.4103/1673-5374.391181, doi:10.4103/1673-5374.391181. This article has 35 citations and is from a peer-reviewed journal.
(liu2025galectin3directsmitophagy pages 1-2): Pei-Han Liu, Yu-Shan Lin, Wei-Hua Chu, Wei-Tse Sun, Po-Yu Huang, Jie-rong Huang, and Wei-Chung Chiang. Galectin-3 directs mitophagy in response to parkin-/proteasome-dependent rupture of mitochondrial outer membrane. Biology Direct, Nov 2025. URL: https://doi.org/10.1186/s13062-025-00692-1, doi:10.1186/s13062-025-00692-1. This article has 1 citations and is from a peer-reviewed journal.
(zaborska2023theroleof pages 1-3): Beata Zaborska, Małgorzata Sikora-Frąc, Krzysztof Smarż, Ewa Pilichowska-Paszkiet, Andrzej Budaj, Dariusz Sitkiewicz, and Grażyna Sygitowicz. The role of galectin-3 in heart failure—the diagnostic, prognostic and therapeutic potential—where do we stand? International Journal of Molecular Sciences, 24:13111, Aug 2023. URL: https://doi.org/10.3390/ijms241713111, doi:10.3390/ijms241713111. This article has 103 citations.
(zhang2020atranslocationpathway pages 1-4): Min Zhang, Lei Liu, Xubo Lin, Yang-Ping Wang, Ying Li, Qing Guo, Shulin Li, Yuxin Sun, Xuan Tao, Di Zhang, Xiachen Lv, Li Zheng, and Liang Ge. A translocation pathway for vesicle-mediated unconventional protein secretion. Cell, 181:637-652.e15, Apr 2020. URL: https://doi.org/10.1016/j.cell.2020.03.031, doi:10.1016/j.cell.2020.03.031. This article has 297 citations and is from a highest quality peer-reviewed journal.
(wang2023periplocinsuppressesthe pages 1-2): Kui Wang, Shuyue Fu, Lixia Dong, Dingyue Zhang, Mao Wang, Xingyun Wu, Enhao Shen, Li Luo, Changlong Li, Edouard Collins Nice, Canhua Huang, and Bingwen Zou. Periplocin suppresses the growth of colorectal cancer cells by triggering lgals3 (galectin 3)-mediated lysophagy. Autophagy, 19:3132-3150, Jul 2023. URL: https://doi.org/10.1080/15548627.2023.2239042, doi:10.1080/15548627.2023.2239042. This article has 49 citations and is from a domain leading peer-reviewed journal.
(zhang2025multifacetedrolesof pages 10-11): Nan Zhang, Qiao Liu, Daihan Wang, Xiaoyun Wang, Zhaoping Pan, Bo Han, and Gu He. Multifaceted roles of galectins: from carbohydrate binding to targeted cancer therapy. Biomarker Research, Mar 2025. URL: https://doi.org/10.1186/s40364-025-00759-1, doi:10.1186/s40364-025-00759-1. This article has 39 citations and is from a peer-reviewed journal.
This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This report is retrieval-only and is generated directly from Asta results.
search_papers_by_relevance with snippet_search.This carbohydrate-binding + lattice-forming activity is the CORE function; nearly all downstream biology (adhesion, immune modulation, chemoattraction, apoptosis regulation) is mediated by cross-linking glycoconjugates.
~25 GO:0005515 IPI annotations, mostly from high-throughput interactome screens (PMID:25416956, 28514442, 31515488, 32296183, 33961781, 40205054) or single-partner IPI (MMP7 PMID:20812334 — MMP7 cleaves Gal-3; CD6/ALCAM PMID:24945728; CHI3L1/IL13RA2 PMID:29427412; endoglin/ENG PMID:31540324; MICA PMID:21712812; SARS-CoV-2 spike PMID:32915505; F1F0-ATP synthase ATP5B PMID:19016746). Generic "protein binding" is uninformative per curation guidelines — mark as over-annotated; the informative MF is carbohydrate/galactoside binding (many of these are glycan-dependent contacts). Do NOT remove (experimental IPI), but down-grade to over-annotated.
Integrated the FutureHouse Falcon deep-research report (LGALS3-deep-research-falcon.md, 23 citations)
into the existing, already-complete review. Conservative enrichment only — no action flips on the
105 reviewed annotations.
fetch-pmid, full text cached)jia2020meritacellular).burbidge2022lgals3(galectin3)).liu2025galectin3directsmitophagy). MEDIUM/VERIFIED. Ties LLPS toNote: Falcon also cites the TMED10 secretion paper (zhang2020atranslocationpathway, Cell 2020); this is the
SAME paper already in the review as PMID:32272059 (the title there reads "A Translocation Pathway for
Vesicle-Mediated Unconventional Protein Secretion"). Not re-added.
description and proposed_new_termsproposed_new_terms "damaged endomembrane glycan sensor activity" with the Jia 2020Ran just gene-iba-support-research asta human LGALS3 over the 15 IBA annotations that lacked
independent literature support (outputs in LGALS3-hypotheses/function-support-*/asta.md). asta
(Semantic Scholar relevance + snippet retrieval) returned 11–16 papers per term with verbatim
snippets, PMIDs/DOIs and scores. I manually sifted every report.
Outcome: no supported_by added from this pass. None of asta's candidates are adequate,
term-specific primary evidence for the GO term in question. The hits fall into three
false-positive classes:
Crucially, asta failed to surface the foundational primary literature that actually established
these galectin-3 functions — e.g. galectin-3 as a monocyte/macrophage chemoattractant (Sano et al.
2000), the εBP/IgE-binding-protein biochemistry, and Mac-2/laminin binding. No laminin-, IgE/εBP-,
or chemoattractant-titled primary paper appeared in any report; the only "disaccharide binding" hit
was an incidental bone-phenotype study (PMID:36062328).
Tuning leverage for next runs (the query is the prompt, truncated to ~500 chars, so wording
matters): include legacy synonyms (galectin-3, Mac-2, εBP) alongside LGALS3, and consider
asta date/citation params — the relevance model here skews to recent, highly-cited genomics-era
papers and misses pre-2005 foundational biochemistry. For a well-studied gene like LGALS3, a targeted
classic-literature lookup is more productive than asta; asta's recall value is likely higher for
poorly-studied genes.
Followed the rule: first check whether the deep-research (asta) report already surfaced the right
paper; if not, iterate manually; if so, curate the snippet. The asta report surfaced the correct
foundational paper in 0 of 11 checked functions, so all support below was found by manual PubMed
(NCBI E-utilities) search and verified verbatim against the fetched abstract in publications/.
Added supported_by to 12 of 15 IBA annotations:
| Term | GO | Reference | Note |
|---|---|---|---|
| monocyte chemotaxis | GO:0002548 | PMID:10925302 (Sano 2000) | galectin-3 induces monocyte migration, chemotactic |
| macrophage chemotaxis | GO:0048246 | PMID:10925302 | "chemoattractant for monocytes and macrophages" |
| positive chemotaxis | GO:0050918 | PMID:10925302 | parent of the above |
| positive regulation of calcium ion import | GO:0090280 | PMID:10925302 | "galectin-3 caused a Ca2+ influx in monocytes" (same paper) |
| laminin binding | GO:0043236 | PMID:2332426 (Woo 1990) | Mac-2 = laminin-binding protein = galectin-3 |
| disaccharide binding | GO:0048030 | PMID:11434930 | ITC of galactose/poly-LacNAc binding; lactose/LacNAc are the disaccharide ligands |
| IgE binding | GO:0019863 | PMID:8347574 | εBP (=Mac-2=galectin-3) "by virtue of its affinity for IgE"; ortholog (rat εBP) evidence, acceptable for an IBA |
| nucleus | GO:0005634 | PMID:12070075 | galectin-3 in nuclear/cytoplasmic SMN complex; pre-mRNA splicing factor |
| cytoplasm | GO:0005737 | PMID:12070075 | nucleocytoplasmic shuttling |
| immunological synapse | GO:0001772 | PMID:19706535 | "recruited to the cytoplasmic side of the immunological synapse" |
| eosinophil chemotaxis | GO:0048245 | PMID:23576987 | Gal-3−/− mice show decreased airway eosinophil recruitment |
| neutrophil chemotaxis | GO:0030593 | PMID:11823514 | galectin-3 promotes neutrophil extravasation/recruitment (mechanism is adhesion-mediated transmigration, not a soluble chemoattractant gradient — supporting, not definitive, for the chemotaxis term) |
Not curated (3) — left honestly unsupported:
Net: manual PubMed cleanly recovered the foundational literature (Sano 2000, Woo 1990, the εBP/IgE
papers, the shuttling papers) that asta entirely missed — reinforcing the deprecation recommendation
(issue #1599).
id: P17931
gene_symbol: LGALS3
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: |-
Galectin-3 (Mac-2, CBP35, IgE-binding protein) is the only chimera-type member of the
galectin family of beta-galactoside-binding lectins. It comprises a single C-terminal
carbohydrate-recognition domain (CRD), which binds beta-galactosides such as lactose and
N-acetyllactosamine (LacNAc), joined to an intrinsically disordered, proline/glycine-rich
N-terminal tail. Although the protein is monomeric, the N-terminal tail mediates
concentration-dependent self-association and liquid-liquid phase separation, giving
galectin-3 functional multivalency so that it cross-links glycoconjugates into ordered
lattices and agglutinates glycosylated cells and particles. Galectin-3 acts both
intracellularly and extracellularly. Inside the cell it is found in the cytoplasm and
nucleus (where it has been implicated as a pre-mRNA splicing factor and RNA-binding
protein) and, together with TRIM16, it senses ruptured endo/lysosomal membranes by
recognizing newly exposed luminal glycans and helps mobilize the autophagy machinery. It
reaches the cell surface and extracellular space through a non-classical, TMED10-facilitated
secretory route. Extracellularly it modulates cell adhesion, cross-links cell-surface
glycoproteins (including branched N-glycans generated by GnT-V), acts as a chemoattractant
for monocytes and macrophages, regulates T-cell, NK-cell and innate-lymphoid-cell activation
and apoptosis, and contributes to inflammation, fibrosis and tumor biology. Its
high-resolution CRD structure and beta-galactoside specificity make it a prominent drug
target.
references:
- id: GO_REF:0000024
title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
by curator judgment of sequence similarity
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000052
title: Gene Ontology annotation based on curation of immunofluorescence data
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on inter-ontology
links
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10925302
title: Human galectin-3 is a novel chemoattractant for monocytes and macrophages.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PubMed-verified primary paper; underpins the BHF-UCL chemotaxis/migration
IDA annotations. Shows galectin-3 chemoattracts monocytes/macrophages, blocked by lactose,
via a PTX-sensitive pathway - i.e. a downstream consequence of its lectin/lattice activity.
- id: PMID:14961764
title: Nucling mediates apoptosis by inhibiting expression of galectin-3 through
interference with nuclear factor kappaB signalling.
findings: []
- id: PMID:16116184
title: Galectin-9 induces maturation of human monocyte-derived dendritic cells.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: This paper is about galectin-9, not galectin-3; it grounds a NOT annotation
indicating galectin-3 does not promote dendritic cell differentiation.
- id: PMID:19016746
title: Identification of mitochondrial F(1)F(0)-ATP synthase interacting with galectin-3
in colon cancer cells.
findings: []
- id: PMID:19056867
title: Large-scale proteomics and phosphoproteomics of urinary exosomes.
findings: []
- id: PMID:19199708
title: Proteomic analysis of human parotid gland exosomes by multidimensional protein
identification technology (MudPIT).
findings: []
- id: PMID:19706535
title: Galectin-3 negatively regulates TCR-mediated CD4+ T-cell activation at the
immunological synapse.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: PubMed-verified; supports immunological synapse localization and negative
regulation of TCR signaling / endocytosis. The ISS T-cell terms are transferred from
mouse ortholog (P16110) using this paper.
- id: PMID:19946888
title: Defining the membrane proteome of NK cells.
findings: []
- id: PMID:20551380
title: Proteomics characterization of extracellular space components in the human
aorta.
findings: []
- id: PMID:20812334
title: Matrilysin-1 (MMP7) cleaves galectin-3 and inhibits wound healing in intestinal
epithelial cells.
findings: []
- id: PMID:21492153
title: Analysis of proteomic changes induced upon cellular differentiation of the
human intestinal cell line Caco-2.
findings: []
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Proteomic differentiation study of Caco-2 cells; correlative IEP evidence
for an association with epithelial cell differentiation, not a direct functional assay.
- id: PMID:21712812
title: A novel strategy for evasion of NK cell immunity by tumours expressing core2
O-glycans.
findings: []
- id: PMID:2261464
title: 'Human IgE-binding protein: a soluble lectin exhibiting a highly conserved
interspecies sequence and differential recognition of IgE glycoforms.'
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Original cloning/characterization establishing galectin-3 as a soluble
lectin that binds IgE glycoforms.
- id: PMID:22658674
title: Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
findings: []
- id: PMID:22664934
title: Comparison of tear protein levels in breast cancer patients and healthy controls
using a de novo proteomic approach.
findings: []
- id: PMID:22761016
title: Downregulation of galectin-3 by EGF mediates the apoptosis of HepG2 cells.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Supports an anti-apoptotic role of cytoplasmic galectin-3 in tumor cells
and its nuclear/cytoplasmic localization.
- id: PMID:23533145
title: In-depth proteomic analyses of exosomes isolated from expressed prostatic
secretions in urine.
findings: []
- id: PMID:23580065
title: Shotgun proteomics reveals specific modulated protein patterns in tears of
patients with primary open angle glaucoma naïve to therapy.
findings: []
- id: PMID:2402511
title: Molecular cloning of a human macrophage lectin specific for galactose.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Original cloning of galectin-3 as a galactose-specific macrophage lectin;
supports laminin binding and the core galactoside-binding identity.
- id: PMID:24846175
title: β1,6 GlcNAc branches-modified PTPRT attenuates its activity and promotes
cell migration by STAT3 pathway.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Shows galectin-3 binds branched N-glycans on PTPRT and promotes its
dimerization, indirectly reducing phosphatase activity - a glycan-lattice effect, not a
direct enzyme-inhibitor molecular function.
- id: PMID:24945728
title: Modulation of CD6 function through interaction with Galectin-1 and -3.
findings: []
- id: PMID:25037231
title: Extracellular matrix signatures of human primary metastatic colon cancers
and their metastases to liver.
findings: []
- id: PMID:25315772
title: Tumor-released Galectin-3, a soluble inhibitory ligand of human NKp30, plays
an important role in tumor escape from NK cell attack.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes galectin-3 as a soluble inhibitory ligand of NKp30 (NCR3),
supporting receptor ligand inhibitor activity and negative regulation of NK/NKT activation.
- id: PMID:25416956
title: A proteome-scale map of the human interactome network.
findings: []
- id: PMID:26582946
title: Group 2 Innate Lymphoid Cells Express Functional NKp30 Receptor Inducing
Type 2 Cytokine Production.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Galectin-3 acts as an inhibitory ligand blocking NKp30-B7-H6 activation of
ILC2; supports receptor ligand inhibitor activity and the negative-regulation immune terms.
- id: PMID:27068509
title: 'Extracellular matrix remodelling in response to venous hypertension: proteomics
of human varicose veins.'
findings: []
- id: PMID:27559042
title: Glycoproteomics Reveals Decorin Peptides With Anti-Myostatin Activity in
Human Atrial Fibrillation.
findings: []
- id: PMID:27693506
title: TRIMs and Galectins Globally Cooperate and TRIM16 and Galectin-3 Co-direct
Autophagy in Endomembrane Damage Homeostasis.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Full text available. Establishes galectin-3 + TRIM16 cooperation in sensing
damaged endomembranes and directing autophagy - a key intracellular glycan-sensing function.
- id: PMID:28327460
title: Comprehensive proteomic characterization of stem cell-derived extracellular
matrices.
findings: []
- id: PMID:28514442
title: Architecture of the human interactome defines protein communities and disease
networks.
findings: []
- id: PMID:28675934
title: Characterization of the Extracellular Matrix of Normal and Diseased Tissues
Using Proteomics.
findings: []
- id: PMID:28893908
title: The intrinsically disordered N-terminal domain of galectin-3 dynamically
mediates multisite self-association of the protein through fuzzy interactions.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Full text available. Mechanistic basis for galectin-3 multivalency - the
disordered N-terminal tail self-associates and drives liquid-liquid phase separation.
- id: PMID:28973299
title: Novel polysaccharide binding to the N-terminal tail of galectin-3 is likely
modulated by proline isomerization.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Full text available. NMR mapping of carbohydrate binding sites including a
novel site in the N-terminal tail; supports carbohydrate binding (EXP, DisProt).
- id: PMID:29427412
title: Galectin-3 Interacts with the CHI3L1 Axis and Contributes to Hermansky-Pudlak
Syndrome Lung Disease.
findings: []
- id: PMID:31515488
title: Extensive disruption of protein interactions by genetic variants across the
allele frequency spectrum in human populations.
findings: []
- id: PMID:31540324
title: Endoglin Protein Interactome Profiling Identifies TRIM21 and Galectin-3 as
New Binding Partners.
findings: []
- id: PMID:32144274
title: Liquid-liquid phase separation and extracellular multivalent interactions
in the tale of galectin-3.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Full text available. Shows the N-terminal domain drives LLPS and that this
explains galectin-3's extracellular agglutination/bridging of glycosylated molecules.
- id: PMID:32272059
title: A Translocation Pathway for Vesicle-Mediated Unconventional Protein Secretion.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes the TMED10-facilitated non-classical secretion route for
galectin-3 (cytoplasm to ERGIC to extracellular); supports cytoplasm and extracellular
region localization.
- id: PMID:32296183
title: A reference map of the human binary protein interactome.
findings: []
- id: PMID:32521192
title: MERIT, a cellular system coordinating lysosomal repair, removal and replacement.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Full text available (PMC). Landmark study establishing that cytosolic
LGALS3/galectin-3 detects lysosomal membrane damage by binding exposed luminal
glycans, then recruits/organizes ESCRT components (PDCD6IP/ALIX, CHMP4A, CHMPB)
for membrane repair and, at later stages, cooperates with TRIM16 to drive
autophagic removal (lysophagy) of damaged lysosomes. Directly supports the
damaged-endomembrane glycan-sensing role and the new lysophagy annotation.
- id: PMID:32915505
title: Structural Characterization of N-Linked Glycans in the Receptor Binding Domain
of the SARS-CoV-2 Spike Protein and their Interactions with Human Lectins.
findings: []
- id: PMID:33961781
title: Dual proteome-scale networks reveal cell-specific remodeling of the human
interactome.
findings: []
- id: PMID:34612142
title: LGALS3 (galectin 3) mediates an unconventional secretion of SNCA/α-synuclein
in response to lysosomal membrane damage by the autophagic-lysosomal pathway in
human midbrain dopamine neurons.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Full text available (PMC). Shows LGALS3 senses lysosomal membrane
damage and mediates TRIM16/ATG16L1-dependent autophagic (unconventional)
secretion of SNCA/alpha-synuclein in human midbrain dopamine neurons, linking
the galectin-3 damaged-endomembrane sensing role to secretory autophagy and
cell-to-cell propagation of pathological alpha-synuclein. Context-specific
neuronal disease mechanism downstream of the core glycan-sensing function.
- id: PMID:40205054
title: Multimodal cell maps as a foundation for structural and functional genomics.
findings: []
- id: PMID:41194217
title: Galectin-3 directs mitophagy in response to Parkin-/proteasome-dependent
rupture of mitochondrial outer membrane.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Full text available (PMC). Proteomic study showing galectin-3 is
enriched on the ruptured outer membrane of damaged mitochondria, relocalizes
from the cytosol to enclose them, interacts with PHB2 and recruits ULK1 to
drive PINK1/Parkin mitophagy. Critically, residue mutations that abolish
galectin-3 liquid-liquid phase separation (LLPS) abrogate its mitochondrial
relocalization and mitophagy function, directly tying the LLPS/condensate-scaffold
molecular function to intracellular organelle quality control. Emerging,
context-specific extension of the damaged-endomembrane glycan-sensing role.
- id: PMID:7682704
title: Decreased expression of Mac-2 (carbohydrate binding protein 35) and loss
of its nuclear localization are associated with the neoplastic progression of
colon carcinoma.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Supports nuclear localization of galectin-3 (Mac-2/CBP35) in colonic
epithelium.
- id: PMID:8692888
title: Expression of galectin-3 modulates T-cell growth and apoptosis.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Shows galectin-3 overexpression promotes T-cell growth and resistance to
apoptosis; notes Bcl-2-like NWGR motif and lactose-inhibitable Bcl-2 interaction.
- id: PMID:9162064
title: Strikingly different localization of galectin-3 and galectin-4 in human colon
adenocarcinoma T84 cells. Galectin-4 is localized at sites of cell adhesion.
findings: []
- id: PMID:9447709
title: Detection and distribution of the carbohydrate binding protein galectin-3
in human notochord, intervertebral disc and chordoma.
findings: []
- id: PMID:9582341
title: X-ray crystal structure of the human galectin-3 carbohydrate recognition
domain at 2.1-A resolution.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: High-resolution structure of the galectin-3 CRD; structural basis of
beta-galactoside recognition (PDB 1A3K).
- id: Reactome:R-HSA-6798743
title: Exocytosis of secretory granule membrane proteins
findings: []
- id: Reactome:R-HSA-6800426
title: Exocytosis of ficolin-rich granule membrane proteins
findings: []
- id: Reactome:R-HSA-8938382
title: LGALS3 gene expression is stimulated by RUNX1 and RUNX2
findings: []
- id: PMID:11434930
title: "Thermodynamic analysis of the binding of galactose and poly-N-acetyllactosamine derivatives to human galectin-3."
findings: []
- id: PMID:2332426
title: "The major non-integrin laminin binding protein of macrophages is identical to carbohydrate binding protein 35 (Mac-2)."
findings: []
- id: PMID:8347574
title: "Epsilon BP, a beta-galactoside-binding animal lectin, recognizes IgE receptor (Fc epsilon RI) and activates mast cells."
findings: []
- id: PMID:12070075
title: "Shuttling of galectin-3 between the nucleus and cytoplasm."
findings: []
- id: PMID:23576987
title: "Eosinophil-expressed galectin-3 regulates cell trafficking and migration."
findings: []
- id: PMID:11823514
title: "Role of galectin-3 as an adhesion molecule for neutrophil extravasation during streptococcal pneumonia."
findings: []
existing_annotations:
- term:
id: GO:0031012
label: extracellular matrix
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: Galectin-3 is secreted and functions extracellularly, cross-linking ECM
glycoproteins (e.g. laminin) into lattices. Extracellular matrix as a site of action is
consistent with the lectin/lattice function, though it is a downstream/extracellular role
rather than the gene's primary intracellular biology.
action: KEEP_AS_NON_CORE
reason: Well-supported extracellular site of action via phylogenetic inference, but a
pleiotropic extracellular localization rather than a core defining feature.
- term:
id: GO:0048030
label: disaccharide binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
supported_by:
- reference_id: PMID:11434930
supporting_text: "Recognized by its specificity for galactose, a detailed characterization of its sugar binding ability has been investigated by isothermal titration calorimetry."
summary: Galectin-3 binds beta-galactoside disaccharides such as lactose and LacNAc through
its CRD. This is a more specific child of carbohydrate binding and accurately captures the
core lectin activity.
action: ACCEPT
reason: Disaccharide (beta-galactoside) binding is phylogenetically conserved and central
to galectin-3 function; well supported experimentally.
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
supported_by:
- reference_id: PMID:12070075
supporting_text: "galectin-3 was identified as a component of a nuclear and cytoplasmic complex, the survival of motor neuron complex, through its interaction with Gemin4."
summary: Galectin-3 is present and active in the nucleus (implicated as a pre-mRNA splicing
factor and RNA-binding protein). Nuclear localization is well established experimentally
and by phylogenetic inference.
action: ACCEPT
reason: Nuclear localization is a conserved, experimentally corroborated feature of
galectin-3.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
supported_by:
- reference_id: PMID:12070075
supporting_text: "Shuttling of galectin-3 between the nucleus and cytoplasm."
summary: Galectin-3 is predominantly cytoplasmic in many cell types, with roles in
endomembrane-damage sensing and anti-apoptotic signaling. Cytoplasmic localization is
well supported.
action: ACCEPT
reason: Cytoplasmic localization is conserved and experimentally corroborated.
- term:
id: GO:0050918
label: positive chemotaxis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
supported_by:
- reference_id: PMID:10925302
supporting_text: "Human galectin-3 is a novel chemoattractant for monocytes and macrophages."
summary: Galectin-3 acts as a chemoattractant for monocytes/macrophages, a downstream
immune-modulatory consequence of its extracellular lectin activity. Real but pleiotropic.
action: KEEP_AS_NON_CORE
reason: Phylogenetically inferred chemoattractant role corroborated experimentally
(PMID:10925302), but a downstream process rather than the core molecular function.
- term:
id: GO:0001772
label: immunological synapse
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
supported_by:
- reference_id: PMID:19706535
supporting_text: "Galectin-3 was recruited to the cytoplasmic side of the immunological synapse (IS) in activated T cells."
summary: Galectin-3 localizes to the immunological synapse where it negatively regulates
TCR signaling. A specialized site of action, downstream of the lattice function.
action: KEEP_AS_NON_CORE
reason: Specialized cell-type-specific site of action; supported but not core to the gene's
general function.
- term:
id: GO:0002548
label: monocyte chemotaxis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
supported_by:
- reference_id: PMID:10925302
supporting_text: "galectin-3 induced human monocyte migration in vitro in a dose-dependent manner, and it was chemotactic at high concentrations (1.0 microM) but chemokinetic at low concentrations (10-100 nM)."
summary: Monocyte chemotaxis is a documented downstream immune activity (PMID:10925302).
Pleiotropic, not core.
action: KEEP_AS_NON_CORE
reason: Real but downstream immune process; redundant with the experimental IDA annotation.
- term:
id: GO:0019863
label: IgE binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
supported_by:
- reference_id: PMID:8347574
supporting_text: "IgE-binding protein (epsilon BP) was originally identified in rat basophilic leukemia (RBL) cells by virtue of its affinity for IgE."
summary: Galectin-3 was originally identified and named as the "IgE-binding protein";
IgE binding is the historical defining activity and a specific glycan-mediated
manifestation of the core carbohydrate-binding function. Accepted as core, consistent
with the IDA IgE-binding annotation and the accepted disaccharide-binding (GO:0048030)
core function.
action: ACCEPT
reason: Historical defining activity ("IgE-binding protein"); a specific manifestation of
the core CRD glycan-binding function, kept consistent with the IDA annotation.
- term:
id: GO:0030593
label: neutrophil chemotaxis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
supported_by:
- reference_id: PMID:11823514
supporting_text: "Role of galectin-3 as an adhesion molecule for neutrophil extravasation during streptococcal pneumonia."
summary: Galectin-3 promotes neutrophil chemotaxis/adhesion in inflammation. Downstream
immune role.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process.
- term:
id: GO:0043236
label: laminin binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
supported_by:
- reference_id: PMID:2332426
supporting_text: "The major non-integrin laminin binding protein of macrophages is identical to carbohydrate binding protein 35 (Mac-2)."
summary: Galectin-3 binds laminin (a heavily glycosylated ECM glycoprotein) via its CRD;
historically named laminin-binding protein. A specific glycan-dependent binding event.
action: KEEP_AS_NON_CORE
reason: A specific glycoprotein-binding facet of the core lectin function.
- term:
id: GO:0045806
label: negative regulation of endocytosis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Galectin-3 lattices retain glycoproteins at the cell surface and reduce their
endocytosis (e.g. at the immunological synapse, PMID:19706535). Downstream consequence of
lattice formation.
action: KEEP_AS_NON_CORE
reason: Downstream regulatory effect of surface-lattice formation; not a core function.
- term:
id: GO:0048245
label: eosinophil chemotaxis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
supported_by:
- reference_id: PMID:23576987
supporting_text: "allergen-challenged mice deficient in Gal-3 (Gal-3(-/-)) exhibit decreased airway recruitment of eosinophils (Eos)"
summary: Galectin-3 promotes eosinophil chemotaxis in allergic inflammation. Downstream
immune role.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process.
- term:
id: GO:0048246
label: macrophage chemotaxis
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
supported_by:
- reference_id: PMID:10925302
supporting_text: "Human galectin-3 is a novel chemoattractant for monocytes and macrophages."
summary: Galectin-3 chemoattracts macrophages (PMID:10925302). Downstream immune role.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process; redundant with experimental IDA.
- term:
id: GO:0090280
label: positive regulation of calcium ion import
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
supported_by:
- reference_id: PMID:10925302
supporting_text: "Galectin-3 caused a Ca2+ influx in monocytes at high, but not low, concentrations, and both lactose and PTX inhibited this response."
summary: Galectin-3 triggers a Ca2+ influx in monocytes at high concentrations
(PMID:10925302), a signaling consequence of receptor cross-linking. Downstream effect.
action: KEEP_AS_NON_CORE
reason: Downstream signaling consequence of lattice/receptor cross-linking; not core.
- term:
id: GO:2001237
label: negative regulation of extrinsic apoptotic signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: Galectin-3 has anti-apoptotic activity (Bcl-2-like, NWGR motif; PMID:8692888,
PMID:22761016). A pleiotropic, context-dependent process.
action: KEEP_AS_NON_CORE
reason: Real but pleiotropic apoptosis-regulatory role; not the core molecular function.
- term:
id: GO:0005576
label: extracellular region
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Galectin-3 is secreted via a non-classical route and is abundant extracellularly.
Localization is correct but downstream of intracellular biology.
action: KEEP_AS_NON_CORE
reason: Correct secreted localization (SubCell mapping), pleiotropic extracellular site.
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Nuclear localization, consistent with the experimental IDA and IBA annotations.
action: ACCEPT
reason: Correct nuclear localization corroborated by multiple experimental annotations.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: Cytoplasmic localization, consistent with experimental IDA/IBA annotations.
action: ACCEPT
reason: Correct cytoplasmic localization corroborated by multiple experimental annotations.
- term:
id: GO:0007165
label: signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000108
qualifier: involved_in
review:
summary: This is an extremely general term auto-inferred from the receptor-ligand-activity
annotation. It conveys little about galectin-3's actual function and is far less
informative than the specific immune-modulatory and lectin activities.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative high-level BP term derived by inter-ontology inference; better
captured by specific processes.
- term:
id: GO:0030246
label: carbohydrate binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: Carbohydrate binding is the core molecular function of galectin-3. The IEA
annotation is fully consistent with extensive experimental and structural data.
action: ACCEPT
reason: Correct core molecular function; redundant with experimental EXP/TAS annotations.
- term:
id: GO:0042129
label: regulation of T cell proliferation
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA-predicted; galectin-3 does modulate T-cell growth (PMID:8692888). Real but
pleiotropic and also captured by the experimental IMP annotation.
action: KEEP_AS_NON_CORE
reason: Pleiotropic immune process; redundant with experimental annotation.
- term:
id: GO:0046636
label: negative regulation of alpha-beta T cell activation
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA-predicted; consistent with negative regulation of TCR signaling at the
synapse (PMID:19706535). Pleiotropic immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune regulation; supported but not core.
- term:
id: GO:0048018
label: receptor ligand activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: enables
review:
summary: ARBA-predicted generic receptor ligand activity. For galectin-3 the experimentally
supported activity is specifically an inhibitory ligand of NKp30 (GO:0141069, IDA);
generic receptor ligand activity is less precise and partly conflicts with the inhibitory
role.
action: MARK_AS_OVER_ANNOTATED
reason: Less precise than the experimentally supported receptor ligand inhibitor activity;
generic prediction.
- term:
id: GO:0070232
label: regulation of T cell apoptotic process
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA-predicted; consistent with the experimental IDA annotation (PMID:8692888).
Pleiotropic immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic immune process; redundant with experimental annotation.
- term:
id: GO:0071677
label: positive regulation of mononuclear cell migration
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: ARBA-predicted; consistent with the experimental chemotaxis annotation
(PMID:10925302). Downstream immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process; redundant with experimental annotation.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19706535
qualifier: enables
review:
summary: A generic protein-binding (IPI) record recording a physical interaction from
PMID:19706535. Generic protein binding is uninformative per curation guidelines and
conveys no specific functional information about galectin-3. The informative molecular
function is its carbohydrate/galactoside binding, with most partner contacts being
glycan-mediated; this generic protein-binding term does not capture an annotated
function and the specific physical-interaction details are better recorded elsewhere.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding conveys no specific functional information; the informative
MF is carbohydrate binding.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:20812334
qualifier: enables
review:
summary: Interaction with MMP7 (which cleaves galectin-3). Generic protein binding is
uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21712812
qualifier: enables
review:
summary: Interaction with MICA in the context of NK-cell evasion. Generic protein binding
is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:2402511
qualifier: enables
review:
summary: From the original cloning paper (here the AHSG/fetuin-A interaction). Generic
protein binding is uninformative; the paper's value is establishing the galactose-specific
lectin identity.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24945728
qualifier: enables
review:
summary: Interaction with CD6 (PMID:24945728). Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25315772
qualifier: enables
review:
summary: Interaction with NKp30/NCR3 as a soluble inhibitory ligand. The informative MF is
receptor ligand inhibitor activity (GO:0141069), not generic protein binding.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; better captured by receptor ligand inhibitor activity.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:25416956
qualifier: enables
review:
summary: High-throughput interactome screen. Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding from a high-throughput screen; not informative.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:28514442
qualifier: enables
review:
summary: High-throughput interactome screen. Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding from a high-throughput screen; not informative.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:29427412
qualifier: enables
review:
summary: Interaction with the CHI3L1/IL13RA2 axis. Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31515488
qualifier: enables
review:
summary: Interaction-disruption-by-variant screen. Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding from a high-throughput screen; not informative.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:31540324
qualifier: enables
review:
summary: Interaction with endoglin (ENG). Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32296183
qualifier: enables
review:
summary: High-throughput binary interactome screen. Generic protein binding is
uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding from a high-throughput screen; not informative.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:32915505
qualifier: enables
review:
summary: Interaction with SARS-CoV-2 spike glycoprotein, a glycan-mediated lectin contact.
Generic protein binding is uninformative; the activity is carbohydrate (glycan) binding.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; the underlying activity is glycan recognition.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:33961781
qualifier: enables
review:
summary: High-throughput interactome screen. Generic protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding from a high-throughput screen; not informative.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:40205054
qualifier: enables
review:
summary: High-throughput cell-map interactome study (ALCAM interaction). Generic protein
binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding from a high-throughput screen; not informative.
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: HPA immunofluorescence places galectin-3 in the nucleoplasm, consistent with its
established nuclear localization.
action: ACCEPT
reason: Specific, experimentally supported nuclear sub-localization.
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: GO_REF:0000052
qualifier: located_in
review:
summary: HPA immunofluorescence places galectin-3 in the cytosol, consistent with its
established cytoplasmic localization.
action: ACCEPT
reason: Specific, experimentally supported cytosolic localization.
- term:
id: GO:0005576
label: extracellular region
evidence_type: EXP
original_reference_id: PMID:32272059
qualifier: located_in
review:
summary: Galectin-3 is secreted via the TMED10-facilitated non-classical pathway into the
extracellular region. Experimentally supported but downstream localization.
action: KEEP_AS_NON_CORE
reason: Correct secreted localization; pleiotropic extracellular site of action.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: EXP
original_reference_id: PMID:32272059
qualifier: located_in
review:
summary: Cytoplasmic pool of galectin-3 is the substrate for non-classical secretion via
TMED10 (PMID:32272059). Consistent with established cytoplasmic localization.
action: ACCEPT
reason: Experimentally supported cytoplasmic localization.
- term:
id: GO:0004864
label: protein phosphatase inhibitor activity
evidence_type: IDA
original_reference_id: PMID:24846175
qualifier: enables
review:
summary: In PMID:24846175 galectin-3 binds branched N-glycans on the phosphatase PTPRT and
promotes its dimerization, which indirectly reduces PTPRT catalytic activity. This is a
glycan-lattice effect on receptor clustering, not a direct allosteric/competitive
phosphatase-inhibitor molecular function.
action: MARK_AS_OVER_ANNOTATED
reason: The effect on phosphatase activity is indirect (via glycan-mediated dimerization),
not a direct enzyme-inhibitor molecular function.
supported_by:
- reference_id: PMID:24846175
supporting_text: GnT-V overexpression enhances galectin-3's cell-surface retention and
promotes PTPRT's dimerization mediated by galectin-3. Increased dimerization subsequently
reduces PTPRT's catalytic activity
- term:
id: GO:0005576
label: extracellular region
evidence_type: IDA
original_reference_id: PMID:26582946
qualifier: is_active_in
review:
summary: Secreted galectin-3 acts extracellularly as an inhibitory ligand of NKp30 on ILC2
(PMID:26582946). Experimentally supported extracellular site of action.
action: KEEP_AS_NON_CORE
reason: Correct extracellular site of action; pleiotropic immune context.
- term:
id: GO:0051134
label: negative regulation of NK T cell activation
evidence_type: IDA
original_reference_id: PMID:26582946
qualifier: involved_in
review:
summary: Galectin-3 blocks NKp30-B7-H6 activation (PMID:26582946), inhibiting NK/ILC2
activation. Downstream immune-modulatory process.
action: KEEP_AS_NON_CORE
reason: Real but pleiotropic downstream immune process.
supported_by:
- reference_id: PMID:26582946
supporting_text: This interaction can be blocked by NKp30 blocking Ab and an inhibitory
ligand, galectin-3.
- term:
id: GO:0141069
label: receptor ligand inhibitor activity
evidence_type: IDA
original_reference_id: PMID:26582946
qualifier: enables
review:
summary: Galectin-3 acts as a soluble inhibitory ligand of the NKp30 (NCR3) receptor,
blocking its activation by B7-H6 (PMID:26582946, PMID:25315772). This is a specific,
experimentally supported molecular function.
action: ACCEPT
reason: Specific, experimentally supported molecular function (inhibitory NKp30 ligand).
supported_by:
- reference_id: PMID:26582946
supporting_text: This interaction can be blocked by NKp30 blocking Ab and an inhibitory
ligand, galectin-3.
- term:
id: GO:0030246
label: carbohydrate binding
evidence_type: EXP
original_reference_id: PMID:28973299
qualifier: enables
review:
summary: NMR mapping (PMID:28973299) demonstrates carbohydrate binding at two CRD sites and
a novel N-terminal-tail site. This is the core molecular function of galectin-3.
action: ACCEPT
reason: Direct experimental evidence for the core carbohydrate-binding molecular function.
supported_by:
- reference_id: PMID:28973299
supporting_text: epitopes for binding to three sites on 15N-labeled Gal-3, two within its
carbohydrate recognition domain (CRD) and one at a novel site within the NT
- term:
id: GO:0140693
label: molecular condensate scaffold activity
evidence_type: IDA
original_reference_id: PMID:28893908
qualifier: enables
review:
summary: The disordered N-terminal domain drives multisite self-association and
liquid-liquid phase separation (PMID:28893908), the molecular basis of galectin-3's
multivalency and lattice/condensate formation. A core, distinctive molecular function.
action: ACCEPT
reason: Experimentally supported; underpins galectin-3's distinctive lattice/condensate
behavior.
supported_by:
- reference_id: PMID:28893908
supporting_text: galectin-3 can also undergo liquid-liquid phase separation
- term:
id: GO:0140693
label: molecular condensate scaffold activity
evidence_type: IDA
original_reference_id: PMID:32144274
qualifier: enables
review:
summary: Galectin-3's N-terminal domain undergoes LLPS and bridges/aggregates glycosylated
molecules (PMID:32144274), explaining its extracellular agglutination function. Supports
the condensate-scaffold/lattice activity.
action: ACCEPT
reason: Experimentally supported condensate-scaffold/lattice activity.
supported_by:
- reference_id: PMID:32144274
supporting_text: its N-terminal domain (NTD) undergoes LLPS driven by interactions between
its aromatic residues
- term:
id: GO:0031334
label: positive regulation of protein-containing complex assembly
evidence_type: IDA
original_reference_id: PMID:24846175
qualifier: involved_in
review:
summary: Galectin-3 promotes glycan-dependent dimerization of PTPRT (PMID:24846175), an
instance of promoting receptor complex assembly via lattice formation. A downstream
consequence of the lattice function.
action: KEEP_AS_NON_CORE
reason: Downstream consequence of glycan-lattice formation; not a core function in itself.
supported_by:
- reference_id: PMID:24846175
supporting_text: promotes PTPRT's dimerization mediated by galectin-3
- term:
id: GO:0031012
label: extracellular matrix
evidence_type: HDA
original_reference_id: PMID:28327460
qualifier: colocalizes_with
review:
summary: High-throughput proteomic detection of galectin-3 in stem-cell-derived ECM.
Localization-by-detection, consistent with secretion.
action: KEEP_AS_NON_CORE
reason: Proteomics colocalization; consistent with secreted galectin-3 but not a functional
or core annotation.
- term:
id: GO:0019903
label: protein phosphatase binding
evidence_type: IPI
original_reference_id: PMID:24846175
qualifier: enables
review:
summary: Galectin-3 binds the phosphatase PTPRT (PMID:24846175). This is a glycan-mediated
contact; more informatively captured by carbohydrate binding, but a specific documented
partner.
action: KEEP_AS_NON_CORE
reason: Specific documented interaction; glycan-mediated and downstream of lectin activity.
- term:
id: GO:1903078
label: positive regulation of protein localization to plasma membrane
evidence_type: IDA
original_reference_id: PMID:24846175
qualifier: involved_in
review:
summary: Galectin-3 lattices retain glycoproteins (e.g. PTPRT) at the cell surface,
prolonging plasma-membrane residence (PMID:24846175). Downstream consequence of lattice
formation.
action: KEEP_AS_NON_CORE
reason: Downstream consequence of surface-lattice formation; not a core function.
supported_by:
- reference_id: PMID:24846175
supporting_text: addition of β1,6 GlcNAc branches on PTPRT prolongs PTPRT's cell-surface
retention time
- term:
id: GO:0009986
label: cell surface
evidence_type: ISS
original_reference_id: GO_REF:0000024
qualifier: located_in
review:
summary: Galectin-3 associates with the cell surface after non-classical secretion, where
it forms glycan lattices. Cell-surface localization is consistent with its extracellular
lattice function.
action: KEEP_AS_NON_CORE
reason: Correct extracellular/cell-surface site of action; pleiotropic.
- term:
id: GO:0031012
label: extracellular matrix
evidence_type: HDA
original_reference_id: PMID:28675934
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in tissue ECM. Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0031012
label: extracellular matrix
evidence_type: HDA
original_reference_id: PMID:25037231
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in colon cancer ECM. Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0005576
label: extracellular region
evidence_type: HDA
original_reference_id: PMID:27068509
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in varicose-vein ECM. Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0031012
label: extracellular matrix
evidence_type: HDA
original_reference_id: PMID:27559042
qualifier: located_in
review:
summary: Glycoproteomic detection of galectin-3 in atrial-fibrillation tissue ECM.
Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0031012
label: extracellular matrix
evidence_type: HDA
original_reference_id: PMID:20551380
qualifier: colocalizes_with
review:
summary: Proteomic characterization of aortic extracellular space detected galectin-3.
Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0030667
label: secretory granule membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6798743
qualifier: located_in
review:
summary: Reactome places galectin-3 at the secretory (specific) granule membrane in the
context of neutrophil degranulation. Consistent with packaging for secretion in
neutrophils; specialized cell-type context.
action: KEEP_AS_NON_CORE
reason: Cell-type-specific granule localization from pathway annotation; not core.
- term:
id: GO:0101003
label: ficolin-1-rich granule membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6800426
qualifier: located_in
review:
summary: Reactome places galectin-3 at the ficolin-1-rich granule membrane in neutrophil
degranulation. Specialized cell-type context.
action: KEEP_AS_NON_CORE
reason: Cell-type-specific granule localization from pathway annotation; not core.
- term:
id: GO:2001200
label: positive regulation of dendritic cell differentiation
evidence_type: IDA
original_reference_id: PMID:16116184
qualifier: involved_in
negated: true
review:
summary: This is a NOT annotation. PMID:16116184 shows galectin-9 (not galectin-3) induces
dendritic-cell maturation; galectin-3 lacks this activity. The negated annotation
correctly records the absence of this function for galectin-3.
action: ACCEPT
reason: Correctly recorded negative (NOT) annotation distinguishing galectin-3 from
galectin-9.
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:23533145
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in urinary/prostatic-secretion exosomes.
Localization-by-detection, consistent with secretion.
action: KEEP_AS_NON_CORE
reason: Proteomics localization; consistent with secretion but not core or functional.
- term:
id: GO:0016020
label: membrane
evidence_type: HDA
original_reference_id: PMID:19946888
qualifier: located_in
review:
summary: NK-cell membrane proteome detection. Very general localization-by-detection term.
action: MARK_AS_OVER_ANNOTATED
reason: Extremely general localization from a proteomics screen; uninformative.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:7682704
qualifier: located_in
review:
summary: Direct experimental evidence of nuclear localization of galectin-3 (Mac-2/CBP35)
in colonic epithelium (PMID:7682704). Core localization.
action: ACCEPT
reason: Direct experimental evidence for nuclear localization.
- term:
id: GO:0050860
label: negative regulation of T cell receptor signaling pathway
evidence_type: ISS
original_reference_id: PMID:19706535
qualifier: involved_in
review:
summary: Transferred from mouse ortholog (P16110); galectin-3 negatively regulates TCR
signaling at the synapse. Pleiotropic downstream immune regulation.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune-regulatory process (ortholog transfer).
- term:
id: GO:2000521
label: negative regulation of immunological synapse formation
evidence_type: ISS
original_reference_id: PMID:19706535
qualifier: involved_in
review:
summary: Transferred from mouse ortholog; galectin-3 limits TCR clustering at the synapse.
Pleiotropic downstream immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process (ortholog transfer).
- term:
id: GO:2001189
label: negative regulation of T cell activation via T cell receptor contact with
antigen bound to MHC molecule on antigen presenting cell
evidence_type: ISS
original_reference_id: PMID:19706535
qualifier: involved_in
review:
summary: Transferred from mouse ortholog; a highly specific child term of the negative TCR
regulation role. Pleiotropic downstream immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic, highly specific downstream immune process (ortholog transfer).
- term:
id: GO:0042129
label: regulation of T cell proliferation
evidence_type: IMP
original_reference_id: PMID:8692888
qualifier: involved_in
review:
summary: Galectin-3 overexpression increases T-cell growth rates (PMID:8692888), an
experimentally supported but pleiotropic immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic immune process supported by experimental evidence.
supported_by:
- reference_id: PMID:8692888
supporting_text: Transfectants expressing galectin-3 displayed higher growth rates than
control transfectants
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:9447709
qualifier: located_in
review:
summary: Direct detection of cytoplasmic galectin-3 in notochord/intervertebral disc tissue
(PMID:9447709). Core localization.
action: ACCEPT
reason: Direct experimental evidence for cytoplasmic localization.
- term:
id: GO:0001772
label: immunological synapse
evidence_type: IDA
original_reference_id: PMID:19706535
qualifier: located_in
review:
summary: Galectin-3 localizes to the immunological synapse where it down-regulates TCR
signaling (PMID:19706535). Specialized site of action.
action: KEEP_AS_NON_CORE
reason: Specialized cell-type-specific site of action; not core.
- term:
id: GO:0002548
label: monocyte chemotaxis
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 chemoattracts monocytes (PMID:10925302), blocked by lactose and a CRD
fragment, via a PTX-sensitive pathway. Downstream immune process.
action: KEEP_AS_NON_CORE
reason: Real but pleiotropic downstream immune process.
supported_by:
- reference_id: PMID:10925302
supporting_text: galectin-3 is a novel chemoattractant for monocytes and macrophages
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:22761016
qualifier: located_in
review:
summary: Galectin-3 detected in the nucleus (PMID:22761016). Consistent with established
nuclear localization.
action: ACCEPT
reason: Experimentally supported nuclear localization.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:22761016
qualifier: located_in
review:
summary: Cytoplasmic galectin-3 mediates anti-apoptotic activity; EGF suppresses cytoplasmic
galectin-3 to permit apoptosis (PMID:22761016). Consistent with cytoplasmic localization.
action: ACCEPT
reason: Experimentally supported cytoplasmic localization.
supported_by:
- reference_id: PMID:22761016
supporting_text: High concentrations of EGF suppressed cytoplasmic expression of galectin-3
- term:
id: GO:0019863
label: IgE binding
evidence_type: IDA
original_reference_id: PMID:2261464
qualifier: enables
review:
summary: Galectin-3 was originally identified and named as the "IgE-binding protein,"
so IgE binding is the historical defining activity of this gene product. It is a
direct manifestation of the CRD's beta-galactoside / glycan-binding activity (the
core molecular function), recognizing IgE glycoforms via its lectin domain. Because
it is a specific, directly demonstrated (IDA) instance of the core carbohydrate-binding
activity, it is accepted as core, consistent with the IBA disaccharide-binding
(GO:0048030) annotation being accepted as core.
action: ACCEPT
reason: Historical defining activity of galectin-3 ("IgE-binding protein"); a specific,
experimentally demonstrated manifestation of the core CRD glycan-binding function,
consistent with treating the underlying beta-galactoside/glycan recognition as core.
- term:
id: GO:0030593
label: neutrophil chemotaxis
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 promotes neutrophil chemotaxis (PMID:10925302). Downstream immune
process.
action: KEEP_AS_NON_CORE
reason: Real but pleiotropic downstream immune process.
- term:
id: GO:0042056
label: chemoattractant activity
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: enables
review:
summary: Galectin-3 functions as a chemoattractant for monocytes/macrophages (PMID:10925302).
This is an experimentally supported molecular function, mediated by its lectin/lattice
activity at the cell surface. Real but a specialized immune-context activity.
action: KEEP_AS_NON_CORE
reason: Experimentally supported but specialized immune-context molecular function, downstream
of the core lectin activity.
supported_by:
- reference_id: PMID:10925302
supporting_text: galectin-3 induced human monocyte migration in vitro in a dose-dependent
manner
- term:
id: GO:0045806
label: negative regulation of endocytosis
evidence_type: IDA
original_reference_id: PMID:19706535
qualifier: involved_in
review:
summary: Galectin-3 lattices reduce receptor endocytosis at the immunological synapse
(PMID:19706535). Downstream consequence of surface-lattice formation.
action: KEEP_AS_NON_CORE
reason: Downstream consequence of lattice formation; not core.
- term:
id: GO:0048245
label: eosinophil chemotaxis
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 promotes eosinophil chemotaxis (PMID:10925302). Downstream immune
process.
action: KEEP_AS_NON_CORE
reason: Real but pleiotropic downstream immune process.
- term:
id: GO:0048246
label: macrophage chemotaxis
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 chemoattracts macrophages (PMID:10925302). Downstream immune process.
action: KEEP_AS_NON_CORE
reason: Real but pleiotropic downstream immune process.
supported_by:
- reference_id: PMID:10925302
supporting_text: Cultured human macrophages and alveolar macrophages also migrated toward
galectin-3
- term:
id: GO:0050918
label: positive chemotaxis
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 drives positive chemotaxis of myeloid cells (PMID:10925302). Downstream
immune process; redundant parent of the specific chemotaxis terms.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process.
- term:
id: GO:0070232
label: regulation of T cell apoptotic process
evidence_type: IDA
original_reference_id: PMID:8692888
qualifier: involved_in
review:
summary: Galectin-3 expression confers resistance to apoptosis in T cells (PMID:8692888).
Pleiotropic immune/apoptosis process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune/apoptosis process.
supported_by:
- reference_id: PMID:8692888
supporting_text: galectin-3 expression in these cells confers resistance to apoptosis
induced by anti-Fas antibody and staurosporine
- term:
id: GO:0071674
label: mononuclear cell migration
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 induces mononuclear cell (monocyte) migration (PMID:10925302).
Downstream immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process.
- term:
id: GO:0071677
label: positive regulation of mononuclear cell migration
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 positively regulates mononuclear cell migration (PMID:10925302).
Downstream immune process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream immune process.
- term:
id: GO:0090280
label: positive regulation of calcium ion import
evidence_type: IDA
original_reference_id: PMID:10925302
qualifier: involved_in
review:
summary: Galectin-3 induces Ca2+ influx in monocytes at high concentrations (PMID:10925302).
Downstream signaling consequence of receptor cross-linking.
action: KEEP_AS_NON_CORE
reason: Downstream signaling consequence; not core.
supported_by:
- reference_id: PMID:10925302
supporting_text: Galectin-3 caused a Ca2+ influx in monocytes at high, but not low,
concentrations
- term:
id: GO:1902041
label: regulation of extrinsic apoptotic signaling pathway via death domain receptors
evidence_type: IMP
original_reference_id: PMID:8692888
qualifier: involved_in
review:
summary: Galectin-3 confers resistance to Fas (death-receptor)-induced apoptosis in T cells
(PMID:8692888). Pleiotropic apoptosis-regulatory process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream apoptosis-regulatory process.
supported_by:
- reference_id: PMID:8692888
supporting_text: confers resistance to apoptosis induced by anti-Fas antibody and
staurosporine
- term:
id: GO:2001237
label: negative regulation of extrinsic apoptotic signaling pathway
evidence_type: IDA
original_reference_id: PMID:22761016
qualifier: involved_in
review:
summary: Cytoplasmic galectin-3 has anti-apoptotic activity; its downregulation by EGF
permits apoptosis (PMID:22761016). Pleiotropic apoptosis-regulatory process.
action: KEEP_AS_NON_CORE
reason: Pleiotropic downstream apoptosis-regulatory process.
supported_by:
- reference_id: PMID:22761016
supporting_text: overexpression of galectin-3 could reduce EGF-induced apoptosis in HepG2
cells
- term:
id: GO:0003723
label: RNA binding
evidence_type: HDA
original_reference_id: PMID:22658674
qualifier: enables
review:
summary: Galectin-3 was captured in a high-throughput mRNA-interactome screen (PMID:22658674)
and has a proposed nuclear pre-mRNA splicing role. RNA binding is plausible but rests on a
proteome-wide capture rather than a dedicated functional assay.
action: KEEP_AS_NON_CORE
reason: Plausible nuclear RNA-associated role from a high-throughput screen; not a core,
directly demonstrated molecular function.
- term:
id: GO:0043236
label: laminin binding
evidence_type: IDA
original_reference_id: PMID:2402511
qualifier: enables
review:
summary: Galectin-3 binds laminin (PMID:2402511); historically named laminin-binding protein.
A specific glycoprotein-binding facet of the core lectin function.
action: KEEP_AS_NON_CORE
reason: Specific glycoprotein-binding facet of the core lectin function.
- term:
id: GO:0030855
label: epithelial cell differentiation
evidence_type: IEP
original_reference_id: PMID:21492153
qualifier: involved_in
review:
summary: Galectin-3 expression changes during Caco-2 enterocyte differentiation
(PMID:21492153), an IEP (expression-pattern) correlation rather than a direct functional
assay. Pleiotropic, correlative.
action: KEEP_AS_NON_CORE
reason: Correlative expression-pattern (IEP) evidence; pleiotropic developmental process.
- term:
id: GO:0005576
label: extracellular region
evidence_type: HDA
original_reference_id: PMID:22664934
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in tears. Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0005576
label: extracellular region
evidence_type: HDA
original_reference_id: PMID:23580065
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in tears (glaucoma study). Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:19199708
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in parotid-gland exosomes. Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0070062
label: extracellular exosome
evidence_type: HDA
original_reference_id: PMID:19056867
qualifier: located_in
review:
summary: Proteomic detection of galectin-3 in urinary exosomes. Localization-by-detection.
action: KEEP_AS_NON_CORE
reason: Proteomics localization consistent with secretion; not core.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6798743
qualifier: located_in
review:
summary: Reactome places galectin-3 at the plasma membrane in the neutrophil-degranulation
pathway. Consistent with cell-surface association after secretion.
action: KEEP_AS_NON_CORE
reason: Cell-surface association from pathway annotation; not core.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-6800426
qualifier: located_in
review:
summary: Reactome plasma-membrane annotation (ficolin-rich granule pathway). Consistent with
cell-surface association.
action: KEEP_AS_NON_CORE
reason: Cell-surface association from pathway annotation; not core.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: Reactome:R-HSA-8938382
qualifier: located_in
review:
summary: Reactome plasma-membrane annotation (RUNX-regulated expression pathway). Consistent
with cell-surface association after secretion.
action: KEEP_AS_NON_CORE
reason: Cell-surface association from pathway annotation; not core.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19016746
qualifier: enables
review:
summary: Interaction with mitochondrial F1F0-ATP synthase in colon cancer cells. Generic
protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: Generic protein binding; not an informative molecular function.
- term:
id: GO:0005743
label: mitochondrial inner membrane
evidence_type: IDA
original_reference_id: PMID:19016746
qualifier: located_in
review:
summary: A single study (PMID:19016746) reports galectin-3 at the mitochondrial inner
membrane via interaction with F1F0-ATP synthase in colon cancer cells. This is an
unusual, context-specific localization not corroborated by the broader literature
(cytoplasm/nucleus/secreted), so it is treated as non-core.
action: KEEP_AS_NON_CORE
reason: Single-study, context-specific localization not corroborated by the broader
literature; retained but non-core.
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:14961764
qualifier: located_in
review:
summary: Galectin-3 detected in the nucleus (PMID:14961764). Consistent with established
nuclear localization.
action: ACCEPT
reason: Experimentally supported nuclear localization.
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:14961764
qualifier: located_in
review:
summary: Galectin-3 detected in the cytoplasm (PMID:14961764). Consistent with established
cytoplasmic localization.
action: ACCEPT
reason: Experimentally supported cytoplasmic localization.
- term:
id: GO:0030246
label: carbohydrate binding
evidence_type: TAS
original_reference_id: PMID:9162064
qualifier: enables
review:
summary: Carbohydrate binding, the core molecular function, asserted by a primary study
(PMID:9162064). Redundant with the EXP/IEA carbohydrate-binding annotations.
action: ACCEPT
reason: Core molecular function; well supported.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: PMID:9162064
qualifier: located_in
review:
summary: Galectin-3 associates with the plasma membrane / cell surface (PMID:9162064),
consistent with its extracellular lattice function after secretion.
action: KEEP_AS_NON_CORE
reason: Cell-surface association; consistent with secreted lattice function but not core.
- term:
id: GO:0062093
label: lysophagy
evidence_type: IDA
original_reference_id: PMID:32521192
qualifier: involved_in
review:
summary: Cytosolic galectin-3 detects lysosomal membrane rupture by binding luminal
glycans newly exposed to the cytosol, recruits and organizes ESCRT components
(PDCD6IP/ALIX, CHMP4A, CHMPB) for membrane repair, and at later stages cooperates
with TRIM16 to engage the autophagy machinery (ATG16L1, ATG13, LC3) in selective
autophagic removal of severely damaged lysosomes (PMID:32521192, PMID:27693506).
This glycan-damage-sensing lysophagy role is among the strongest intracellular
functions of galectin-3 and is not currently represented in GOA; it is added here
as a NEW annotation. The same machinery also mediates galectin-3-dependent
secretory autophagy of alpha-synuclein after vesicular damage (PMID:34612142).
action: NEW
reason: Strongly supported intracellular function (damaged-endomembrane glycan
sensing leading to ESCRT repair and TRIM16-dependent lysophagy) that is absent
from the existing GOA annotations; added as a core glycan-sensing process.
supported_by:
- reference_id: PMID:32521192
supporting_text: LGALS3 (galectin 3) detects
membrane damage by detecting exposed lumenal glycosyl groups, recruits and
organizes ESCRT components PDCD6IP/ALIX, CHMP4A, and CHMPB at damaged sites on
the lysosomes, and facilitates ESCRT-driven repair of lysosomal membrane. At
later stages, LGALS3 cooperates with TRIM16, an autophagy receptor-regulator, to
engage autophagy machinery in removal of excessively damaged lysosomes.
- reference_id: PMID:32521192
supporting_text: The capacity of LGALS3 to recognize glycans is required to initiate autophagy in response to lysosomal damage.
core_functions:
- description: Beta-galactoside / N-acetyllactosamine binding by the C-terminal carbohydrate
recognition domain (CRD). This is the defining, evolutionarily conserved molecular function
of galectin-3 and the basis for essentially all of its downstream biology.
molecular_function:
id: GO:0030246
label: carbohydrate binding
supported_by:
- reference_id: PMID:28973299
supporting_text: epitopes for binding to three sites on 15N-labeled Gal-3, two within its
carbohydrate recognition domain (CRD) and one at a novel site within the NT
- reference_id: PMID:2402511
supporting_text: hMac-2 synthesized in vitro is recognized by the M3/38 monoclonal
antibody to Mac-2 and binds to the desialylated glycoprotein asialofetuin and to
laminin, a major component of basement membranes
- description: Galactoside-specific recognition (lactose / LacNAc), the precise specificity of
the galectin-3 CRD, the basis of its beta-galactoside specificity.
molecular_function:
id: GO:0016936
label: galactoside binding
locations:
- id: GO:0009986
label: cell surface
- id: GO:0031012
label: extracellular matrix
supported_by:
- reference_id: PMID:9582341
supporting_text: We report here the x-ray crystal structure of the human galectin-3
CRD, in complex with lactose and N-acetyllactosamine, at 2.1-A resolution
- description: Self-association and liquid-liquid phase separation driven by the intrinsically
disordered N-terminal tail, which gives the monomeric galectin-3 functional multivalency and
lets it scaffold glycoconjugate lattices/condensates and agglutinate (bridge) glycosylated
cells and particles. This lattice-forming activity is the distinctive feature of galectin-3
relative to other galectins.
molecular_function:
id: GO:0140693
label: molecular condensate scaffold activity
locations:
- id: GO:0005737
label: cytoplasm
- id: GO:0005634
label: nucleus
- id: GO:0005576
label: extracellular region
supported_by:
- reference_id: PMID:28893908
supporting_text: galectin-3 can also undergo liquid-liquid phase separation
- reference_id: PMID:32144274
supporting_text: its N-terminal domain (NTD) undergoes LLPS driven by interactions between
its aromatic residues
- reference_id: PMID:41194217
supporting_text: mutations in key residues that confer the liquid-liquid phase separation (LLPS)
properties of Galectin-3 abrogates its mitochondrial relocalization, ULK1
recruitment, and mitophagy, suggesting that the capacity to form biomolecular
condensates around the damaged mitochondria is crucial for the mitophagy
function of Galectin-3
- description: Glycan-based sensing of damaged endomembranes. Cytosolic galectin-3 uses
its carbohydrate-recognition activity to detect ruptured endo/lysosomal membranes by
binding luminal beta-galactoside glycans that become exposed on the cytosolic face,
thereby marking the damaged compartment and mobilizing membrane repair (ESCRT) and
selective autophagy (TRIM16-dependent lysophagy). This is a major intracellular role
of galectin-3 and is mechanistically built on the same CRD carbohydrate-binding
activity. (No dedicated 'damaged-endomembrane glycan sensor' MF term exists in GO;
the role is represented here by the core carbohydrate-binding MF, with the lysophagy
process captured in existing_annotations as GO:0062093.)
molecular_function:
id: GO:0030246
label: carbohydrate binding
locations:
- id: GO:0005737
label: cytoplasm
supported_by:
- reference_id: PMID:32521192
supporting_text: LGALS3 (galectin 3) detects membrane damage by detecting exposed
lumenal glycosyl groups
- reference_id: PMID:32521192
supporting_text: The capacity of LGALS3 to recognize glycans is required to initiate autophagy in response to lysosomal damage.
proposed_new_terms:
- proposed_name: galectin-glycan lattice assembly
proposed_definition: The process of cross-linking multivalent glycoconjugates (glycoproteins
and glycolipids) on a cell surface or in the extracellular matrix into an ordered,
higher-order lattice by a galectin, regulating the residence time, clustering, and signaling
of the cross-linked glycoproteins.
justification: Galectin-3 (and other galectins) form 'galectin-glycan lattices' that retain
receptors at the cell surface and modulate their endocytosis and signaling. Current GO terms
(carbohydrate binding, molecular condensate scaffold activity, negative regulation of
endocytosis, positive regulation of protein localization to plasma membrane) only capture
facets of this distinctive, well-described mechanism, with no single term for the lattice
assembly process itself.
supported_by:
- reference_id: PMID:32144274
supporting_text: acting as a "bridge" to aggregate glycosylated molecules
- proposed_name: damaged endomembrane glycan sensor activity
proposed_definition: Binding to luminal glycans that become exposed on the cytosolic face of
ruptured endosomal or lysosomal membranes, marking the damaged compartment for autophagic
clearance.
justification: Galectin-3 (with TRIM16) senses ruptured endo/lysosomal membranes by recognizing
newly exposed luminal glycans and mobilizes the autophagy machinery (lysophagy). This
glycan-damage-sensing role is mechanistically distinct from generic carbohydrate binding and
is increasingly central to galectin-3 biology, but is not represented by a dedicated MF term.
supported_by:
- reference_id: PMID:27693506
supporting_text: Endomembrane Damage Homeostasis
- reference_id: PMID:32521192
supporting_text: LGALS3 (galectin 3) detects
membrane damage by detecting exposed lumenal glycosyl groups
suggested_questions:
- question: Is the nuclear pre-mRNA splicing / RNA-binding role of galectin-3 a direct,
sequence- or structure-specific RNA-binding activity, or an indirect association via
glycosylated/RNP partners captured in proteome-wide screens?
- question: To what extent does liquid-liquid phase separation of the N-terminal domain operate
intracellularly (e.g. in endomembrane-damage sensing) versus only in the extracellular
agglutination context?
suggested_experiments:
- hypothesis: The carbohydrate-recognition activity of the CRD is required for galectin-3-mediated
sensing of damaged endomembranes and recruitment of the autophagy machinery.
description: Compare wild-type galectin-3 with a CRD point mutant (e.g. R186S, which abolishes
beta-galactoside binding) for recruitment to ruptured lysosomes (induced by LLOMe or silica)
and for co-recruitment of TRIM16/ATG16L1/BECN1, by live-cell imaging and co-IP.
experiment_type: structure-function / mutagenesis with damage-induced autophagy assay
- hypothesis: N-terminal-domain-driven self-association/LLPS is necessary for galectin-3 lattice
formation and the consequent retention of branched-N-glycan receptors at the cell surface.
description: Compare full-length galectin-3 with N-terminal-tail deletion and aromatic-residue
mutants (tryptophan/tyrosine substitutions that impair LLPS) for surface-receptor residence
time (e.g. of GnT-V-modified receptors), lattice formation, and endocytosis rates.
experiment_type: domain-deletion / point-mutation with quantitative cell-surface imaging