All Projects - AI Gene Review

131 of 131 projects. Derived from each project's YAML frontmatter; the curated index is the hand-organized entry point. Filters combine (AND across groups, OR within a group).

Project	Maturity	Review	Tags	Species	Genes	Docs
Ad-Hoc Bioinformatics Analysis Project `AD_HOC_BIOINFORMATICS`	SCOPING	—	PIPELINEFLAGSHIP	—	—	—
Alkyl Hydroperoxide Reductase Activity — Obsoletion & Replacement `ALKYL_HYDROPEROXIDE_REDUCTASE_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Allergens Project `ALLERGENS`	SCOPING	—	BIOLOGY_DOMAIN	FELCACANLFHORSEBOVINDERPTBETPNmouserathuman	22	—
AlphaFold Database Integration for Gene Annotation Review `ALPHAFOLD`	IN_PROGRESS	—	PIPELINE	—	—	—
Alzheimer Disease Gene Review Project `ALZHEIMER_DISEASE`	SCOPING	—	BIOLOGY_DOMAIN	human	34	—
Anti-CRISPR Proteins Project `ANTI_CRISPR`	COMPLETE	—	BIOLOGY_DOMAINFLAGSHIP	—	—	1
Antimicrobial Resistance (AMR) Project `ANTIMICROBIAL_RESISTANCE`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	—	—	3
Arabidopsis Heat Stress Gene Curation Project `ARATH_HEAT_STRESS`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	ARATH	—	—
Aromatic Amino Acid Biosynthetic Process, Prephenate Pathway — Obsoletion `PREPHENATE_PATHWAY_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
ASSAY_TO_FUNCTION `ASSAY_TO_FUNCTION`	MATURE	—	PIPELINE	—	—	6
Autoimmune Genetics - Greatest Hits `AUTOIMMUNE`	IN_PROGRESS	—	BIOLOGY_DOMAIN	human	—	—
Bacillus subtilis project `BACSU`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	BACSU	—	1
Behaviour Annotation Project `BEHAVIOR`	IN_PROGRESS	—	PIPELINEFLAGSHIP	mousehumanratwormyeastDANREDROMEDAPPU	15	4
BIOINFORMATICS Case Studies `BIOINFORMATICS`	SCOPING	—	PIPELINE	—	—	—
BioReason-Pro Comparison Project `BIOREASON_COMPARISON`	MATURE	—	PIPELINEFLAGSHIP	humanmouseratwormyeastSCHPODROMEARATHECOLIBACSUPSEPKDANRE	—	21
Biosynthetic Gene Cluster (BGC) Enzyme Complexes Project `BGC`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	—	—	—
C. elegans Ciliopathy/IFT Pathway Project `CAEEL_CILIOPATHY`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	2
C. elegans Lysosome-to-Nucleus Lipid Signaling (OEA Pathway) `CAEEL_LYSOSOME_NUCLEUS_LIPID_SIGNALING`	SCOPING	—	BIOLOGY_DOMAIN	worm	—	—
C. elegans Mitophagy & Mitochondrial Quality Control Project `CAEEL_MITOPHAGY`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	1
C. elegans P Granule/Germ Granule Dynamics Project `CAEEL_P_GRANULES`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	—
C. elegans Proteostasis Network Project `CAEEL_PROTEOSTASIS`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	2
C. elegans Surveillance Immunity Project `CAEEL_SURVEILLANCE_IMMUNITY`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	3
C. elegans Unfolded Protein Response & Stress Integration Project `CAEEL_UPR_STRESS`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	1
CAEEL Surveillance Immunity Project - Comprehensive Curation Recommendations `SURVEILLANCE_IMMUNITY_CURATION_RECOMMENDATIONS`	COMPLETE	—	BIOLOGY_DOMAINFLAGSHIP	worm	—	—
Calcitriol Biosynthesis from Calciol — Obsoletion & Replacement `CALCITRIOL_BIOSYNTHESIS_OBSOLETION`	SCOPING	—	OBSOLETION	humanmouserat	5	—
CASP-like (CASPL) family curation `CASPL_FAMILY`	MATURE	—	BIOLOGY_DOMAIN	ARATHPOPTR	22	4
Cellulosome Project `CELLULOSOME`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	—	—	1
Cephalopod Neuro Gene Reviews `CEPHALOPOD`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	OCTVUOCTBMDORPESEPOFSTHOUDOROPEUPSC	—	2
cGAS-STING Cytosolic DNA Sensing Project `CGAS_STING_PATHWAY`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Ciliary Basal Body-Plasma Membrane Docking — Obsoletion & Replacement `CILIARY_BASAL_BODY_DOCKING_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Comprehensive GO Annotation Review: C. elegans Surveillance Immunity Genes (Priority 2) `SURVEILLANCE_IMMUNITY_GENES_REVIEW`	COMPLETE	—	BIOLOGY_DOMAIN	worm	—	—
Contested Function Project `CONTESTED_FUNCTION`	IN_PROGRESS	—	PIPELINEFLAGSHIP	—	—	—
Contractile Vacuole Tethering — Obsoletion & Replacement (GO:0140025) `CONTRACTILE_VACUOLE_TETHERING_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
COSCIENTIST `COSCIENTIST`	IN_PROGRESS	—	PIPELINE	humanECOLIMYCTUMETJASCHPOworm	—	1
Cuproptosis (Copper-Dependent Cell Death) Project `CUPROPTOSIS`	SCOPING	—	BIOLOGY_DOMAIN	human	—	1
Ent-Kaurene Oxidation to Kaurenoic Acid — Obsoletion & Replacement `KAURENE_OXIDATION_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
Entner-Doudoroff Sub-pathway Obsoletion (GO:0009255, GO:0061679, GO:0061680, GO:0061681) `ENTNER_DOUDOROFF_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Enzyme Specificity Project `ENZYME_SPECIFICITY`	COMPLETE	—	PIPELINEFLAGSHIP	—	—	—
ER-phagy (Selective ER Autophagy) Project `ER_PHAGY`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Ergothioneine Biosynthesis Variant-Pathway Terms — Obsoletion `ERGOTHIONEINE_BIOSYNTHESIS_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
ER–Plasma Membrane Tethering — Obsoletion & Replacement (GO:0061817) `ER_PM_TETHERING_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
EVIDENCE_SOURCE_SUFFICIENCY `EVIDENCE_SOURCE_SUFFICIENCY`	MATURE	—	PIPELINEFLAGSHIP	—	—	2
Extracellular Matrix (ECM) Project `ECM`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Ferroptosis Project `FERROPTOSIS`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	human	22	1
Function Knowledge Gaps `FUNCTION_KNOWLEDGE_GAPS`	MATURE	—	PIPELINEFLAGSHIP	—	—	1
Geranylgeranyl Reductase Activity — Obsoletion & Replacement `GERANYLGERANYL_REDUCTASE_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Glycobiology Project `GLYCOBIOLOGY`	IN_PROGRESS	—	BIOLOGY_DOMAINPIPELINE	human	7	4
GO Annotation Curation Review: C. elegans Surveillance Immunity Genes `SURVEILLANCE_IMMUNITY_CURATION_FINDINGS`	COMPLETE	—	BIOLOGY_DOMAIN	worm	—	—
GO Annotation Review Summary: C. elegans Priority 3 Surveillance Immunity Genes `SURVEILLANCE_IMMUNITY_GENE_REVIEW_SUMMARY`	COMPLETE	—	BIOLOGY_DOMAIN	worm	—	—
Human BBSome Project `HUMAN_BBSOME`	IN_PROGRESS	—	BIOLOGY_DOMAIN	human	14	—
Human Proteostasis Network `PROTEOSTASIS`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	753
Hypochlorous Acid Metabolic Process Terms — Obsoletion `HYPOCHLOROUS_ACID_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
IBA Annotation Quality Project `IBA_REVIEW`	COMPLETE	—	PIPELINEFLAGSHIP	—	—	3
ICAM-3 Receptor Activity — Obsoletion & Replacement `ICAM3_RECEPTOR_ACTIVITY_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Inferred from Sequence Orthology (ISO) Evidence Code Review `ISO`	SCOPING	—	PIPELINE	humanmouserat	—	—
Integrated Stress Response (ISR) Project `INTEGRATED_STRESS_RESPONSE`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
InterPro Mapping Review Project `INTERPRO`	SCOPING	—	PIPELINE	—	—	1
Iron-Sulfur Cluster Biogenesis Project `IRON_SULFUR_CLUSTER_BIOGENESIS`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
ISOFORMS: Genes with Clear Functional Differences Between Isoforms `ISOFORMS`	MATURE	—	PIPELINEFLAGSHIP	humanmouseratDROME	18	—
Mechanobiology Gene Review Project `MECHANOBIOLOGY`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Metabolic Model Analysis Project `METABOLIC_MODEL_ANALYSIS`	COMPLETE	—	PIPELINEFLAGSHIP	—	—	—
Metabolomics Interpretation with GO and GO-CAM `METABOLOMICS`	IN_PROGRESS	—	PIPELINE	—	—	18
Methylorubrum extorquens MLL Cluster Curation Project `METEA_MLL_CLUSTER`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	METEA	—	—
Mevalonate Pathway Term Cleanup — Obsoletion & Replacement `MEVALONATE_PATHWAY_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
MicroRNA Degradation / TDMD Project `MIRNA_DEGRADATION`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	humanmouseDROMEworm	9	1
Mitochondrial Import Pathways Project `MITOCHONDRIAL_IMPORT_PATHWAYS`	MATURE	—	BIOLOGY_DOMAIN	human	—	1
Mitochondrion Targeting Sequence Binding — Obsoletion & Replacement `MITOCHONDRION_TARGETING_SEQUENCE_BINDING_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
Mitochondrion–ER Membrane Tethering — Obsoletion & Replacement (GO:1990456) `MITO_ER_TETHERING_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
NCBIFAM / CDD → GO Contribution & Gap Project `NCBIFam`	SCOPING	—	PIPELINE	—	—	2
Neural and Glial Cell Fate Determination Project `NEURON_DEVELOPMENT`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	—	—	—
Neuroblast Proliferation / Division — Vertebrate vs Protostome Disambiguation `NEUROBLAST_PROLIFERATION_DISAMBIGUATION`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	—	—	—
Nicotine Biosynthesis Project `NICOTINE_BIOSYNTHESIS`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	NICAT	18	2
Nitratidesulfovibrio vulgaris Pathways Project `NITV2_PATHWAYS`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	DESVH	—	—
Nitrogen Cycle Metabolic Process — do_not_annotate / Regulation Term Obsoletion `NITROGEN_CYCLE_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Nitrogen Cycle Module `NITROGEN_CYCLE`	SCOPING	—	BIOLOGY_DOMAIN	—	—	—
NLRP3 Inflammasome Assembly Project `NLRP3_INFLAMMASOME`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Nuclear Localization Sequence Binding — Obsoletion & Replacement `NLS_BINDING_OBSOLETION`	MATURE	—	OBSOLETION	—	—	—
Ortholog Conjecture Project `ORTHOLOG_CONJECTURE`	IN_PROGRESS	—	PIPELINE	—	—	1
Over-Annotation Patterns Project `OVER_ANNOTATION_PATTERNS`	IN_PROGRESS	—	PIPELINEFLAGSHIP	—	—	—
Oxidative Phosphorylation (OXPHOS) Project `OXPHOS`	IN_PROGRESS	—	BIOLOGY_DOMAIN	human	—	—
P. putida Gene Annotation Review Project `P_PUTIDA`	COMPLETE	—	BIOLOGY_DOMAIN	PSEPK	—	—
PAINT Human No-IBA Gene Review Project `PAINT`	SCOPING	—	PIPELINEFLAGSHIP	human	—	—
Parasite Immune Modulators `PARASITE_IMMUNE_MODULATORS`	IN_PROGRESS	—	BIOLOGY_DOMAIN	—	—	—
Parasites `PARASITES`	SCOPING	—	BIOLOGY_DOMAIN	STECR9BILABRUMA	—	—
Pathway satisfiability: context-resolved module logic `PATHWAY_SATISFIABILITY`	IN_PROGRESS	—	PIPELINE	—	—	—
PDB: Deposited Structures as Functional-Insight Evidence `PDB`	MATURE	—	PIPELINE	—	—	5
Peroxisome Biogenesis Project `PEROXISOME`	IN_PROGRESS	—	BIOLOGY_DOMAIN	human	—	—
Peroxisome Targeting Signal Binding — Obsoletion & Replacement `PEROXISOME_TARGETING_SIGNAL_OBSOLETION`	SCOPING	—	OBSOLETION	—	—	—
Pfam → GO Mapping: A Precision Gap-Filling Experiment `PFAM`	MATURE	—	PIPELINE	—	—	3
Phosphorylation Annotation Refactor Project `PHOSPHORYLATION_REFACTOR`	MATURE	—	PIPELINEFLAGSHIP	—	—	—
Photosynthesis Project `PHOTOSYNTHESIS`	IN_PROGRESS	—	BIOLOGY_DOMAIN	—	—	—
PINK1-Parkin Mitophagy Project `MITOPHAGY`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Plant-Encoded Sense & Response Biosensors `BIOSENSORS`	IN_PROGRESS	—	BIOLOGY_DOMAIN	—	—	—
Prokaryotic Immunity Term Prediction `PROKARYOTIC_IMMUNITY_TERM_PREDICTION`	SCOPING	—	PIPELINE	—	—	—
Protein Complex Functions Project `PROTEIN_COMPLEX_FUNCTIONS`	MATURE	—	PIPELINEFLAGSHIP	human	—	22
Protein Localization to ER Exit Site — Obsoletion `ER_EXIT_SITE_LOCALIZATION_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
ProtNLM2 Evaluation `PROTNLM_EVALUATION`	COMPLETE	—	EVALUATIONML_PREDICTIONS	9PRIMABRPRAEDAEAQUCTARAHYARATHARTANASPORBALMUBORPEBOVINCAEELCALMICANLFCHRVOCOLLICOTJACUCMEDANREDEIRADROPSDROVIGADMOGIBF5JUGREMACFAMAIZEMYTGAORYSIORYSJPANPAPARTEPHATCRABITSOYBNSTRCOTAKRUTOBACTRIV3WHEATXANCPXENNAXENTR	50	3
Pseudoenzymes Project `PSEUDOENZYMES`	MATURE	—	PIPELINEFLAGSHIP	—	—	1
Rare Earth Element (REE) Extraction Pathways (Biological Systems) `REE`	IN_PROGRESS	—	BIOLOGY_DOMAIN	—	—	1
Reactome Black Box Event Gap-Filling `REACTOME_GAP_FILLING`	IN_PROGRESS	—	PIPELINE	—	—	—
Regulation of COPII Vesicle Coating — Obsoletion & Replacement `COPII_VESICLE_COATING_REGULATION_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Regulation of Synaptic Vesicle Docking — Obsoletion & MF Refactor `SYNAPTIC_VESICLE_DOCKING_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
Review Quality Audit `REVIEW_QUALITY_AUDIT`	IN_PROGRESS	—	PIPELINE	—	—	1
RHEA → GO Contribution & Gap Project `RHEA`	SCOPING	—	PIPELINE	—	—	5
Ribosome Quality Control (RQC) Project `RIBOSOME_QUALITY_CONTROL`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Satellite Model Organisms `SATELLITE_MODEL_ORGANISMS`	SCOPING	—	BIOLOGY_DOMAIN	CAEBRPRIPA	—	—
SNIPE: Membrane-Bound Nuclease Anti-Phage Defence `SNIPE`	MATURE	—	BIOLOGY_DOMAIN	—	—	2
Specific Annotation Edit Recommendations `SURVEILLANCE_IMMUNITY_ANNOTATION_EDITS`	COMPLETE	—	BIOLOGY_DOMAIN	worm	—	—
Stress Granule Assembly Project `STRESS_GRANULES`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	human	—	—
Structure-Based Function Prediction for Gene Review `STRUCTURE_FUNCTION`	MATURE	—	PIPELINE	—	—	—
Succinate Dehydrogenase (Complex II) — gp2term Relation Review (`enables` → `contributes_to`) `SDH_GP2TERM_CONTRIBUTES_TO`	IN_PROGRESS	—	PIPELINEFLAGSHIP	—	—	—
Sulfide Oxidation Children — Obsoletion & Replacement `SULFIDE_OXIDATION_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Surveillance Immunity Gene Curation: Implementation Checklist `SURVEILLANCE_IMMUNITY_CURATION_CHECKLIST`	MATURE	—	BIOLOGY_DOMAIN	worm	—	—
SwissProt Keywords (SPKW) Unique Terms Project `SPKW`	MATURE	—	PIPELINEFLAGSHIP	—	—	13
Tardigrade Stress Response Protein Curation Project `TARDIGRADE_STRESS_RESPONSE`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	RAMVA	—	1
Top-Nots: Candidate NOT Annotations from Existing Reviews `TOP_NOTS`	MATURE	—	PIPELINE	humanmouseyeastSCHPODROMEANOGAACET2BACSUDESVHECOLIMETEAMETTPPSEAEPSEPKSALTYCANGACLOCLARATHworm	—	—
TreeGrafter Inference Evaluation `TREEGRAFTER`	IN_PROGRESS	—	EVALUATIONPIPELINE	—	—	1
Unfolded Protein Binding Annotation Review `UNFOLDED_PROTEIN_BINDING`	MATURE	—	BIOLOGY_DOMAINFLAGSHIP	humanmouseyeastSCHPODROMEDANREARATHBOVINCANALCRIGRECOLINEUCRASPNGSALTYHYPJEARATHworm	—	1
UniPathway Unique Terms Project `UNIPATHWAY`	MATURE	—	PIPELINEFLAGSHIP	—	—	—
UniProt CAUTION Note Project `UNIPROT_CAUTION_NOTE`	MATURE	—	PIPELINEFLAGSHIP	—	—	7
UniProt Proteome Removal Impact Assessment `PROTEOME_REMOVAL`	SCOPING	—	PIPELINE	—	—	—
Validating E. coli ML Predictions `VALIDATING_ECOLI_PREDICTIONS`	IN_PROGRESS	—	PIPELINEFLAGSHIP	ECOLI	—	—
VAMPIROME `VAMPIROME`	MATURE	—	BIOLOGY_DOMAIN	DESRO	15	3
Vesicle Docking BP Subtree — Obsoletion & MF Refactor (GO:0048278) `VESICLE_DOCKING_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Vesicle Targeting (GO:0006903) & Descendants — Obsoletion & Replacement `VESICLE_TARGETING_OBSOLETION`	IN_PROGRESS	—	OBSOLETIONFLAGSHIP	—	—	—
Vesicle Tethering BP Subtree — Obsoletion & MF Refactor (GO:0099022) `VESICLE_TETHERING_OBSOLETION`	IN_PROGRESS	—	OBSOLETION	—	—	—
Yeast Cell Cycle & Translation Control `YEAST_CELL_CYCLE`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	yeast	—	—
Yeast DNA Repair & Chromatin Dynamics `YEAST_DNA_REPAIR_CHROMATIN`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	yeast	—	—
Yeast Epigenetics & Histone Inheritance `YEAST_EPIGENETICS_HISTONE_INHERITANCE`	IN_PROGRESS	—	BIOLOGY_DOMAINFLAGSHIP	yeast	—	—
Yeast Metabolic Engineering & Bioproduction `YEAST_METABOLIC_ENGINEERING`	SCOPING	—	BIOLOGY_DOMAINFLAGSHIP	yeast	—	—
Yeast Replicative Aging & mRNA Processing `YEAST_REPLICATIVE_AGING`	COMPLETE	—	BIOLOGY_DOMAINFLAGSHIP	yeast	—	—